C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GRIP and coiled-coil domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135968 GCC2 9606 + 2:108448561-108509415 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309863 GCC2-014 108448561-108509398 protein_coding
  ENST00000393321 GCC2-004 108481697-108490135 nonsense_mediated_decay
  ENST00000409821 GCC2-006 108449231-108470062 protein_coding
  ENST00000409896 GCC2-003 108449884-108472899 protein_coding
  ENST00000447558 GCC2-009 108475562-108483156 nonsense_mediated_decay
  ENST00000462897 GCC2-008 108471814-108475394 protein_coding
  ENST00000467566 GCC2-005 108449191-108450019 retained_intron
  ENST00000478207 GCC2-007 108449223-108469456 processed_transcript
  ENST00000480863 GCC2-010 108493301-108509415 retained_intron
  ENST00000481729 GCC2-012 108483124-108484739 retained_intron
  ENST00000482325 GCC2-001 108449240-108509397 nonsense_mediated_decay
  ENST00000485546 GCC2-011 108469300-108470227 processed_transcript
  ENST00000492785 GCC2-013 108471845-108473328 protein_coding
  ENST00000614209 GCC2-201 108469808-108472878 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309863ENST00000393321ENST00000409821ENST00000480863ENST00000482325ENST00000614209
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309863 N/A N/A 1.489±0.00 2.010±0.00 2.063±0.00 3.440±0.00 0.543±0.03 0.774±0.00 1.911±1.72 1.254±0.14 0.248±0.00 2.909±1.66 N/A 5.738±0.00
ENST00000393321 N/A N/A N/A N/A N/A N/A N/A N/A 0.598±0.00 N/A 0.921±0.00 N/A N/A N/A
ENST00000409821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.663±0.00 N/A N/A
ENST00000480863 N/A N/A N/A N/A N/A N/A N/A 1.126±0.00 0.180±0.00 N/A N/A N/A 0.114±0.00 N/A
ENST00000482325 2.325±0.00 3.499±0.00 1.616±0.00 4.454±1.89 2.338±0.45 3.590±0.00 1.110±0.65 2.501±1.15 0.546±0.00 3.063±0.69 0.520±0.23 7.189±6.26 2.164±1.50 4.780±0.72
ENST00000614209 N/A N/A N/A N/A N/A 3.713±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0001 VISTA 2:108335931-108937600
CIL_00010T CIL_00010T_0001 CGP 2:108448561-108687246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000042 IEA protein targeting to Golgi
GO:0000166 IEA nucleotide binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006622 IMP protein targeting to lysosome
GO:0016020 IDA membrane
GO:0031023 IMP microtubule organizing center organization
GO:0034067 IMP protein localization to Golgi apparatus
GO:0034453 IMP microtubule anchoring
GO:0034499 IMP late endosome to Golgi transport
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042802 IPI identical protein binding
GO:0070861 IMP regulation of protein exit from endoplasmic reticulum
GO:0071955 IMP recycling endosome to Golgi transport
GO:0090161 IMP Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000038039 Gcc2 GRIP and coiled-coil domain containing 2 protein_coding Mus_musculus

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