C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRIP and coiled-coil domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309863 GCC2-014 ENSG00000135968 9606 + 2:108448561-108509398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000309863
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000309863 1.489±0.00 2.010±0.00 2.063±0.00 3.440±0.00 0.543±0.03 0.774±0.00 1.911±1.72 1.254±0.14 0.248±0.00 2.909±1.66 5.738±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0001 VISTA 2:108335931-108937600
CIL_00010T CIL_00010T_0001 CGP 2:108448561-108687246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 IEA protein targeting to Golgi
GO:0000166 IEA nucleotide binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006622 IMP protein targeting to lysosome
GO:0016020 IDA membrane
GO:0031023 IMP microtubule organizing center organization
GO:0034067 IMP protein localization to Golgi apparatus
GO:0034453 IMP microtubule anchoring
GO:0034499 IMP late endosome to Golgi transport
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042802 IPI identical protein binding
GO:0070861 IMP regulation of protein exit from endoplasmic reticulum
GO:0071955 IMP recycling endosome to Golgi transport
GO:0090161 IMP Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057659 Gcc2-001 protein_coding Mus_musculus 0 4529
ENSMUST00000162041 Gcc2-002 protein_coding Mus_musculus 0 4510
ENSMUST00000162860 Gcc2-005 protein_coding Mus_musculus 0 4458
ENSMUST00000160636 Gcc2-010 retained_intron Mus_musculus 0 878
ENSMUST00000160416 Gcc2-009 protein_coding Mus_musculus 0 486
ENSMUST00000160427 Gcc2-007 protein_coding Mus_musculus 0 407
ENSMUST00000162984 Gcc2-006 nonsense_mediated_decay Mus_musculus 0 387
ENSMUST00000161570 Gcc2-008 processed_transcript Mus_musculus 0 289
ENSMUST00000162965 Gcc2-003 retained_intron Mus_musculus 0 193

Loading