C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GRIP and coiled-coil domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038039 Gcc2 10090 + 10:58255497-58305599 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057659 Gcc2-001 58255497-58305599 protein_coding
  ENSMUST00000160416 Gcc2-009 58274957-58281394 protein_coding
  ENSMUST00000160427 Gcc2-007 58255713-58269335 protein_coding
  ENSMUST00000160636 Gcc2-010 58285927-58292768 retained_intron
  ENSMUST00000160677 Gcc2-004 58273446-58276294 retained_intron
  ENSMUST00000161570 Gcc2-008 58255891-58268046 processed_transcript
  ENSMUST00000162041 Gcc2-002 58255530-58305242 protein_coding
  ENSMUST00000162860 Gcc2-005 58255539-58305591 protein_coding
  ENSMUST00000162965 Gcc2-003 58298410-58305589 retained_intron
  ENSMUST00000162984 Gcc2-006 58255508-58269463 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057659ENSMUST00000160416ENSMUST00000160636ENSMUST00000162041ENSMUST00000162860ENSMUST00000162965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057659 0.496±0.04 0.518±0.00 3.097±0.50 4.790±3.01 0.625±0.21 3.268±1.47 0.481±0.25 1.158±0.51 1.204±0.58 1.956±0.06 1.146±0.27 2.371±1.77 2.726±0.70 1.570±0.77
ENSMUST00000160416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.477±0.00 28.336±0.31 N/A
ENSMUST00000160636 N/A N/A N/A N/A N/A N/A N/A 2.386±0.00 1.592±0.00 N/A N/A 3.200±1.21 N/A N/A
ENSMUST00000162041 N/A N/A N/A 13.796±0.00 N/A 1.085±0.00 N/A N/A N/A N/A 0.839±0.00 3.851±2.74 2.221±2.19 8.204±0.00
ENSMUST00000162860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.715±0.00
ENSMUST00000162965 2.293±0.84 1.959±0.74 7.832±0.98 8.683±1.55 2.635±1.30 4.915±1.12 1.729±0.68 3.111±1.22 2.836±1.74 6.424±2.74 3.756±0.65 2.542±0.58 4.486±1.69 4.235±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010T CIL_00010T_0002 CGP 10:58255497-58424691

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000042 IEA protein targeting to Golgi
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0006622 IEA protein targeting to lysosome
GO:0016020 IEA membrane
GO:0031023 IEA microtubule organizing center organization
GO:0034067 IEA protein localization to Golgi apparatus
GO:0034453 IEA microtubule anchoring
GO:0034499 IEA late endosome to Golgi transport
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0042802 IEA identical protein binding
GO:0070861 IEA regulation of protein exit from endoplasmic reticulum
GO:0071955 IEA recycling endosome to Golgi transport
GO:0090161 IEA Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000135968 GCC2 GRIP and coiled-coil domain containing 2 protein_coding Homo_sapiens

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