C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136099 PCDH8 9606 - 13:52842889-52848641 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338862 PCDH8-002 52843979-52848641 protein_coding
  ENST00000377942 PCDH8-001 52842889-52848640 protein_coding
  ENST00000613548 PCDH8-005 52844459-52845693 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonMuscleOvaryTestisENST00000338862ENST00000377942ENST00000613548
Transcript ID Adrenal Brain Breast Colon Muscle Ovary Testis
ENST00000338862 0.027±0.00 2.534±0.69 0.034±0.00 0.087±0.00 0.012±0.00 N/A 0.293±0.06
ENST00000377942 N/A 1.077±0.38 N/A N/A N/A N/A N/A
ENST00000613548 N/A 5.857±0.14 N/A 0.167±0.00 N/A 0.072±0.00 1.270±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ME CIL_0000ME_0001 CGP 13:52703264-52848641

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001756 IEA somitogenesis
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007267 TAS cell-cell signaling
GO:0007268 IEA synaptic transmission
GO:0016020 IEA membrane
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006467 pcdh8 protocadherin 8 protein_coding Danio_rerio
ENSDARG00000042586 si:ch211-199f5.1 protocadherin 8 protein_coding Danio_rerio
ENSMUSG00000036422 Pcdh8 protocadherin 8 protein_coding Mus_musculus

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