C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338862 PCDH8-002 ENSG00000136099 9606 - 13:52843979-52848641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonMuscleTestisENST00000338862
Transcript ID Adrenal Brain Breast Colon Muscle Testis
ENST00000338862 0.027±0.00 2.534±0.69 0.034±0.00 0.087±0.00 0.012±0.00 0.293±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ME CIL_0000ME_0001 CGP 13:52703264-52848641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007267 TAS cell-cell signaling
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039568 Pcdh8-201 protein_coding Mus_musculus 0 2577

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