C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036422 Pcdh8 10090 - 14:79766772-79771312 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039568 Pcdh8-201 79766772-79771312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000039568
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000039568 0.027±0.01 0.017±0.01 0.044±0.03 16.118±10.66 0.012±0.00 0.008±0.00 0.011±0.00 0.032±0.02 0.019±0.01 0.020±0.01 0.535±0.13 0.026±0.01 0.928±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ME CIL_0000ME_0002 CGP 14:79637690-79771312

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001756 IMP somitogenesis
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 IEA synaptic transmission
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006467 pcdh8 protocadherin 8 protein_coding Danio_rerio
ENSDARG00000042586 si:ch211-199f5.1 protocadherin 8 protein_coding Danio_rerio
ENSG00000136099 PCDH8 protocadherin 8 protein_coding Homo_sapiens

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