C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: IMP4, U3 small nucleolar ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136718 IMP4 9606 + 2:130342225-130347810 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259239 IMP4-001 130342225-130346624 protein_coding
  ENST00000409649 IMP4-010 130342910-130346364 protein_coding
  ENST00000409935 IMP4-002 130342877-130346519 protein_coding
  ENST00000428740 IMP4-012 130342924-130346467 protein_coding
  ENST00000452955 IMP4-014 130343270-130346549 protein_coding
  ENST00000456713 IMP4-013 130342912-130345686 nonsense_mediated_decay
  ENST00000460100 IMP4-017 130345633-130346622 retained_intron
  ENST00000460766 IMP4-004 130342922-130347810 retained_intron
  ENST00000462357 IMP4-015 130345642-130346341 retained_intron
  ENST00000462392 IMP4-003 130342894-130347351 retained_intron
  ENST00000464432 IMP4-005 130342894-130346411 retained_intron
  ENST00000470672 IMP4-007 130342897-130344946 retained_intron
  ENST00000473689 IMP4-006 130342896-130346272 retained_intron
  ENST00000475074 IMP4-016 130345945-130346625 retained_intron
  ENST00000477375 IMP4-008 130342897-130345761 retained_intron
  ENST00000490895 IMP4-009 130342894-130346052 retained_intron
  ENST00000495606 IMP4-011 130342918-130345020 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259239ENST00000409649ENST00000409935ENST00000428740ENST00000452955ENST00000460766ENST00000462392ENST00000464432ENST00000473689ENST00000475074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259239 N/A N/A N/A N/A N/A N/A 0.915±0.00 N/A 2.502±0.00 N/A N/A N/A N/A N/A
ENST00000409649 N/A N/A 3.615±0.00 N/A N/A N/A N/A 2.843±0.00 N/A N/A 16.001±0.00 N/A 23.014±0.00 N/A
ENST00000409935 15.333±0.00 N/A N/A N/A N/A N/A 14.587±0.00 N/A 20.929±0.00 14.598±0.00 18.411±0.00 N/A N/A N/A
ENST00000428740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.867±0.00 N/A N/A N/A
ENST00000452955 N/A N/A N/A N/A 3.574±0.00 N/A N/A 4.292±0.00 N/A N/A N/A 5.747±0.00 N/A N/A
ENST00000460766 7.742±0.00 15.806±0.00 N/A 13.651±7.74 7.790±0.00 7.740±5.50 7.343±0.00 9.364±8.13 6.806±4.18 3.248±2.02 5.448±3.80 18.340±2.62 9.866±1.77 8.786±0.92
ENST00000462392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.296±0.00 N/A N/A N/A
ENST00000464432 15.265±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.498±0.00 N/A N/A N/A
ENST00000475074 N/A N/A N/A N/A N/A N/A N/A N/A 25.504±0.00 N/A 12.285±8.58 92.588±0.00 41.732±0.00 35.979±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J7 CIL_0001J7_0001 CGP 2:130338241-130347810
CIL_0001J6 CIL_0001J6_0001 CGP 2:130342225-130375409

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0006364 NAS rRNA processing
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054540 imp4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000026127 Imp4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) protein_coding Mus_musculus

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