C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026127 Imp4 10090 + 1:34439851-34449356 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027303 Imp4-001 34439851-34449356 protein_coding
  ENSMUST00000128086 Imp4-006 34439953-34443455 processed_transcript
  ENSMUST00000134327 Imp4-005 34439937-34444027 processed_transcript
  ENSMUST00000136770 Imp4-002 34440041-34444514 nonsense_mediated_decay
  ENSMUST00000137794 Imp4-004 34439905-34443856 nonsense_mediated_decay
  ENSMUST00000149962 Imp4-003 34439905-34444387 retained_intron
  ENSMUST00000187077 Imp4-008 34439898-34442569 retained_intron
  ENSMUST00000191000 Imp4-009 34448247-34448938 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027303ENSMUST00000134327ENSMUST00000136770
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027303 7.805±1.31 8.777±0.68 4.373±0.32 4.342±2.35 7.396±1.67 7.187±0.95 3.131±0.49 6.820±1.29 5.873±1.39 8.212±1.01 1.354±0.26 10.635±3.69 4.881±2.15 3.387±1.46
ENSMUST00000134327 18.211±0.00 21.169±1.41 N/A N/A 15.993±0.85 14.432±1.41 8.012±0.00 19.685±3.56 16.578±6.75 N/A N/A 23.958±2.22 26.245±3.52 N/A
ENSMUST00000136770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.167±8.18 3.962±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J7 CIL_0001J7_0002 CGP 1:34436670-34449356
CIL_0001J6 CIL_0001J6_0002 CGP 1:34439851-34475733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 ISA RNA binding
GO:0005515 IEA protein binding
GO:0005730 ISS nucleolus
GO:0006364 TAS rRNA processing
GO:0030519 ISA snoRNP binding
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054540 imp4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) protein_coding Danio_rerio
ENSG00000136718 IMP4 IMP4, U3 small nucleolar ribonucleoprotein protein_coding Homo_sapiens

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