C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IMP4, U3 small nucleolar ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460766 IMP4-004 ENSG00000136718 9606 + 2:130342922-130347810 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000460766
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000460766 7.742±0.00 15.806±0.00 13.651±7.74 7.790±0.00 7.740±5.50 7.343±0.00 9.364±8.13 6.806±4.18 3.248±2.02 5.448±3.80 18.340±2.62 9.866±1.77 8.786±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J7 CIL_0001J7_0001 CGP 2:130338241-130347810
CIL_0001J6 CIL_0001J6_0001 CGP 2:130342225-130375409

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027303 Imp4-001 protein_coding Mus_musculus 0 1020
ENSMUST00000134327 Imp4-005 processed_transcript Mus_musculus 0 704
ENSMUST00000136770 Imp4-002 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000128086 Imp4-006 processed_transcript Mus_musculus 0 215
ENSMUST00000149962 Imp4-003 retained_intron Mus_musculus 0 213
ENSMUST00000137794 Imp4-004 nonsense_mediated_decay Mus_musculus 0 213
ENSMUST00000187077 Imp4-008 retained_intron Mus_musculus 7e-23 113

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