C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycophorin C (Gerbich blood group)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136732 GYPC 9606 + 2:126655933-126696675 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259254 GYPC-001 126655933-126696670 protein_coding
  ENST00000356887 GYPC-201 126655935-126696675 protein_coding
  ENST00000409836 GYPC-002 126656184-126696664 protein_coding
  ENST00000459787 GYPC-005 126656142-126678887 processed_transcript
  ENST00000464053 GYPC-003 126656189-126696667 processed_transcript
  ENST00000484700 GYPC-004 126656133-126658192 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259254ENST00000409836ENST00000464053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259254 43.205±0.00 46.996±0.00 0.816±0.00 1.406±0.21 31.108±25.84 24.333±21.96 14.586±8.47 5.792±4.97 5.970±4.93 14.269±8.85 10.374±1.42 22.751±25.09 19.518±4.87 12.957±0.00
ENST00000409836 50.266±0.00 107.188±0.00 1.385±0.00 4.111±0.00 25.950±23.91 20.613±19.71 41.518±0.00 13.454±0.00 6.569±0.00 25.987±24.00 18.155±3.49 20.012±13.48 14.388±3.29 12.891±10.46
ENST00000464053 N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DW CIL_0000DW_0002 CGP 2:124025287-126696675
CIL_0007V0 CIL_0007V0_0001 VISTA 2:126373666-126974900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 NAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0016020 IDA membrane
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041546 gypc glycophorin C (Gerbich blood group) protein_coding Danio_rerio
ENSMUSG00000090523 Gypc glycophorin C protein_coding Mus_musculus

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