C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007V0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm291 VISTA 9606 2:126373666-126974900
GeneTranscriptPositionBiotype
ENSG00000136732 (GYPC)
glycophorin C (Gerbich blood group) 		ENST00000259254 (GYPC-001) 126655933-126696670 protein_coding
ENST00000356887 (GYPC-201) 126655935-126696675 protein_coding
ENST00000409836 (GYPC-002) 126656184-126696664 protein_coding
ENST00000459787 (GYPC-005) 126656142-126678887 processed_transcript
ENST00000464053 (GYPC-003) 126656189-126696667 processed_transcript
ENST00000484700 (GYPC-004) 126656133-126658192 processed_transcript
ENSG00000213236 (YWHAZP2)
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 2 		ENST00000440317 (YWHAZP2-001) 126557435-126558162 processed_pseudogene
ENSG00000235128 (AC013474.4)
 ENST00000440018 (AC013474.4-001) 126679622-126680420 processed_pseudogene
CIL_0007V0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm291 VISTA 10090 18:32241944-32843241
GeneTranscriptPositionBiotype
ENSMUSG00000024379 (Tslp)
thymic stromal lymphopoietin 		ENSMUST00000025237 (Tslp-201) 32815383-32819799 protein_coding
ENSMUSG00000024381 (Bin1)
bridging integrator 1 		ENSMUST00000025239 (Bin1-201) 32377217-32435736 protein_coding
ENSMUST00000091967 (Bin1-202) 32377217-32435736 protein_coding
ENSMUSG00000024382 (Ercc3)
excision repair cross-complementing rodent repair deficiency, complementation group 3 		ENSMUST00000025241 (Ercc3-001) 32240300-32270151 protein_coding
ENSMUST00000129023 (Ercc3-003) 32257269-32270091 processed_transcript
ENSMUST00000142213 (Ercc3-002) 32240354-32270151 retained_intron
ENSMUSG00000038299 (Wdr36)
WD repeat domain 36 		ENSMUST00000053663 (Wdr36-201) 32837225-32866420 protein_coding
ENSMUST00000166214 (Wdr36-202) 32837225-32866350 protein_coding
ENSMUSG00000089529 (Gm22325)
predicted gene, 22325 		ENSMUST00000158904 (Gm22325-201) 32293350-32293657 misc_RNA
ENSMUSG00000090523 (Gypc)
glycophorin C 		ENSMUST00000172434 (Gypc-003) 32529792-32535418 protein_coding
ENSMUST00000174000 (Gypc-002) 32528325-32559980 protein_coding
ENSMUST00000174459 (Gypc-001) 32528322-32560034 protein_coding
ENSMUSG00000097413 (A830052D11Rik)
RIKEN cDNA A830052D11 gene 		ENSMUST00000181729 (A830052D11Rik-201) 32359057-32378284 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007V0_0001ENSG00000136732ENST00000259254ENST00000356887ENST00000409836ENST00000459787ENST00000464053ENST00000484700ENSG00000213236ENST00000440317ENSG00000235128ENST00000440018CIL_0007V0_0002ENSMUSG00000024379ENSMUST00000025237ENSMUSG00000024381ENSMUST00000025239ENSMUST00000091967ENSMUSG00000024382ENSMUST00000025241ENSMUST00000129023ENSMUST00000142213ENSMUSG00000038299ENSMUST00000053663ENSMUST00000166214ENSMUSG00000089529ENSMUST00000158904ENSMUSG00000090523ENSMUST00000172434ENSMUST00000174000ENSMUST00000174459ENSMUSG00000097413ENSMUST00000181729
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007V0_0001ENSG00000136732ENST00000259254ENST00000409836ENST00000464053ENSG00000213236ENST00000440317ENSG00000235128ENST00000440018CIL_0007V0_0002ENSMUSG00000024379ENSMUST00000025237ENSMUSG00000024381ENSMUST00000025239ENSMUST00000091967ENSMUSG00000024382ENSMUST00000025241ENSMUST00000129023ENSMUST00000142213ENSMUSG00000038299ENSMUST00000053663ENSMUST00000166214ENSMUSG00000089529ENSMUST00000158904ENSMUSG00000090523ENSMUST00000172434ENSMUST00000174000ENSMUST00000174459ENSMUSG00000097413ENSMUST00000181729
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136732 ENST00000259254 43.205±0.00 46.996±0.00 0.816±0.00 1.406±0.21 31.108±25.84 24.333±21.96 14.586±8.47 5.792±4.97 5.970±4.93 14.269±8.85 10.374±1.42 22.751±25.09 19.518±4.87 12.957±0.00
ENST00000356887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409836 50.266±0.00 107.188±0.00 1.385±0.00 4.111±0.00 25.950±23.91 20.613±19.71 41.518±0.00 13.454±0.00 6.569±0.00 25.987±24.00 18.155±3.49 20.012±13.48 14.388±3.29 12.891±10.46
ENST00000459787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464053 N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213236 ENST00000440317 0.114±0.00 0.119±0.00 N/A 0.151±0.00 0.050±0.00 0.155±0.00 0.077±0.00 0.201±0.15 N/A N/A 0.015±0.00 0.088±0.08 N/A 0.108±0.06
ENSG00000235128 ENST00000440018 0.463±0.00 0.986±0.00 0.303±0.00 0.210±0.06 0.275±0.07 0.135±0.00 0.214±0.10 0.229±0.12 0.205±0.19 0.515±0.25 0.675±0.53 0.159±0.08 0.127±0.00 0.157±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024379 ENSMUST00000025237 0.292±0.17 N/A 0.943±0.01 0.098±0.03 0.342±0.17 0.208±0.08 0.117±0.04 0.144±0.06 0.053±0.02 0.750±0.07 0.259±0.07 0.710±0.35 0.300±0.19 0.081±0.04
ENSMUSG00000024381 ENSMUST00000025239 N/A N/A N/A 20.920±3.33 N/A 1.682±0.01 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000091967 12.857±2.64 10.196±6.59 59.711±0.74 11.255±1.49 20.793±10.59 5.361±2.07 1.137±0.43 1.972±0.74 7.220±3.66 3.367±0.76 173.530±19.20 10.457±4.71 13.285±13.10 0.518±0.28
ENSMUSG00000024382 ENSMUST00000025241 14.041±2.19 8.551±1.35 12.476±1.93 10.645±2.63 9.957±1.71 13.389±0.83 5.478±0.61 10.700±1.17 7.120±1.37 13.376±0.72 3.982±0.48 15.823±1.46 15.590±3.32 14.919±0.90
ENSMUST00000129023 N/A N/A N/A N/A 5.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142213 N/A 1.337±0.00 N/A N/A 1.319±0.00 1.522±0.00 0.753±0.00 N/A N/A N/A 0.810±0.00 1.900±0.06 1.742±0.00 N/A
ENSMUSG00000038299 ENSMUST00000053663 1.360±0.56 N/A 5.246±1.05 3.832±1.66 1.497±0.45 0.707±0.00 1.288±0.17 1.988±0.95 3.353±2.11 1.809±0.98 1.824±0.39 4.022±1.54 4.298±1.93 0.823±0.17
ENSMUST00000166214 8.581±1.86 6.797±2.19 3.633±2.26 4.113±1.62 8.304±1.51 3.830±2.68 4.038±0.74 5.131±1.00 5.445±1.49 5.920±1.27 2.956±0.36 11.482±4.34 9.609±4.71 3.760±1.10
ENSMUSG00000089529 ENSMUST00000158904 N/A 0.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090523 ENSMUST00000172434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.293±0.00 N/A N/A
ENSMUST00000174000 N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A N/A N/A 2.526±1.38 2.096±0.07 0.127±0.00
ENSMUST00000174459 24.106±4.69 10.563±0.78 14.568±0.30 2.272±0.20 22.742±6.15 4.851±0.73 14.590±0.95 4.204±0.29 33.022±30.77 11.542±0.89 12.619±2.12 11.097±3.98 4.129±2.22 0.801±0.04
ENSMUSG00000097413 ENSMUST00000181729 0.478±0.09 0.775±0.48 0.732±0.02 0.381±0.00 0.288±0.11 0.136±0.03 0.080±0.03 1.002±0.52 0.435±0.27 0.180±0.03 4.068±0.70 0.263±0.12 0.615±0.32 0.058±0.03

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