C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycophorin C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000090523 Gypc 10090 - 18:32528322-32560034 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000172434 Gypc-003 32529792-32535418 protein_coding
  ENSMUST00000174000 Gypc-002 32528325-32559980 protein_coding
  ENSMUST00000174459 Gypc-001 32528322-32560034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172434ENSMUST00000174000ENSMUST00000174459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.293±0.00 N/A N/A
ENSMUST00000174000 N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A N/A N/A 2.526±1.38 2.096±0.07 0.127±0.00
ENSMUST00000174459 24.106±4.69 10.563±0.78 14.568±0.30 2.272±0.20 22.742±6.15 4.851±0.73 14.590±0.95 4.204±0.29 33.022±30.77 11.542±0.89 12.619±2.12 11.097±3.98 4.129±2.22 0.801±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007V0 CIL_0007V0_0002 VISTA 18:32241944-32843241

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041546 gypc glycophorin C (Gerbich blood group) protein_coding Danio_rerio
ENSG00000136732 GYPC glycophorin C (Gerbich blood group) protein_coding Homo_sapiens

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