C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: outer dense fiber of sperm tails 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136811 ODF2 9606 + 9:128455186-128501292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351030 ODF2-201 128456006-128501292 protein_coding
  ENST00000372791 ODF2-006 128456919-128494836 protein_coding
  ENST00000372807 ODF2-009 128460559-128500255 protein_coding
  ENST00000372814 ODF2-008 128456057-128494839 protein_coding
  ENST00000393527 ODF2-005 128456208-128500960 protein_coding
  ENST00000393533 ODF2-018 128455187-128494833 protein_coding
  ENST00000421776 ODF2-020 128456450-128485404 protein_coding
  ENST00000432065 ODF2-012 128456466-128473741 protein_coding
  ENST00000434106 ODF2-011 128456422-128501292 protein_coding
  ENST00000444119 ODF2-002 128460559-128500255 protein_coding
  ENST00000444993 ODF2-010 128456129-128461373 retained_intron
  ENST00000446274 ODF2-003 128456433-128471414 protein_coding
  ENST00000448249 ODF2-004 128456167-128494833 protein_coding
  ENST00000469582 ODF2-001 128456101-128469470 retained_intron
  ENST00000470061 ODF2-007 128456985-128469234 protein_coding
  ENST00000483070 ODF2-015 128492794-128500072 protein_coding
  ENST00000488909 ODF2-016 128497502-128500391 retained_intron
  ENST00000497812 ODF2-014 128455186-128471346 protein_coding
  ENST00000546203 ODF2-019 128456424-128494833 protein_coding
  ENST00000604420 ODF2-017 128456152-128500483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351030ENST00000372791ENST00000372807ENST00000372814ENST00000393527ENST00000393533ENST00000421776ENST00000434106ENST00000444119ENST00000448249ENST00000483070ENST00000546203ENST00000604420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351030 N/A N/A 1.051±0.00 0.853±0.00 0.759±0.05 1.462±0.24 0.699±0.03 N/A 0.933±0.29 2.488±0.00 1.408±0.00 3.965±0.60 1.094±0.06 N/A
ENST00000372791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 65.517±21.45
ENST00000372807 3.014±0.00 2.472±0.00 N/A 1.622±1.06 2.355±0.65 3.608±0.00 0.835±0.18 N/A 1.178±0.00 N/A 1.458±0.00 11.032±4.62 3.824±2.77 N/A
ENST00000372814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.522±11.93
ENST00000393527 N/A N/A N/A 1.341±0.00 2.253±0.00 4.272±0.00 1.185±0.00 3.104±0.00 2.478±0.00 N/A N/A 1.845±0.00 0.857±0.00 N/A
ENST00000393533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.348±0.00 126.867±0.00
ENST00000421776 N/A N/A 0.580±0.00 1.241±0.00 N/A 0.818±0.00 N/A N/A 2.058±0.00 N/A N/A N/A N/A N/A
ENST00000434106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.304±0.00 N/A N/A
ENST00000444119 N/A 3.319±0.00 N/A N/A N/A N/A N/A 1.968±0.00 N/A 1.034±0.00 N/A 3.266±0.00 1.701±0.00 N/A
ENST00000448249 3.970±0.00 3.467±0.00 0.781±0.00 3.010±0.00 1.627±0.00 N/A 1.309±0.00 N/A N/A 3.829±0.00 2.123±0.00 3.088±0.00 1.453±0.00 39.671±0.00
ENST00000483070 N/A N/A N/A N/A N/A N/A N/A N/A 3.218±0.00 N/A N/A N/A N/A N/A
ENST00000546203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.020±0.00 N/A 30.975±0.00
ENST00000604420 1.736±0.00 N/A N/A N/A N/A N/A N/A 2.511±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E9 CIL_0007E9_0001 CGP 9:128411751-128501292
CIL_0007EC CIL_0007EC_0001 CGP 9:128455186-128542288

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0001520 IEA outer dense fiber
GO:0005198 TAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005874 IEA microtubule
GO:0005929 IEA cilium
GO:0007275 IEA multicellular organismal development
GO:0007286 IEA spermatid development
GO:0017137 IPI Rab GTPase binding
GO:0036064 IDA ciliary basal body
GO:0072372 IDA primary cilium
GO:1902017 IMP regulation of cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020702 odf2b outer dense fiber of sperm tails 2b protein_coding Danio_rerio
ENSDARG00000028900 odf2a outer dense fiber of sperm tails 2a protein_coding Danio_rerio
ENSMUSG00000026790 Odf2 outer dense fiber of sperm tails 2 protein_coding Mus_musculus

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