C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: outer dense fiber of sperm tails 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026790 Odf2 10090 + 2:29889221-29931746 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028128 Odf2-009 29890063-29922539 protein_coding
  ENSMUST00000046571 Odf2-001 29889895-29931746 protein_coding
  ENSMUST00000113755 Odf2-008 29889818-29922539 protein_coding
  ENSMUST00000113756 Odf2-002 29889795-29931745 protein_coding
  ENSMUST00000113757 Odf2-004 29889795-29931095 protein_coding
  ENSMUST00000113759 Odf2-003 29889817-29931745 protein_coding
  ENSMUST00000113762 Odf2-011 29890143-29922539 protein_coding
  ENSMUST00000113763 Odf2-010 29889785-29922539 protein_coding
  ENSMUST00000113764 Odf2-012 29890540-29922536 protein_coding
  ENSMUST00000113765 Odf2-006 29890156-29931095 protein_coding
  ENSMUST00000113767 Odf2-007 29889720-29922539 protein_coding
  ENSMUST00000123335 Odf2-014 29889221-29901107 protein_coding
  ENSMUST00000126103 Odf2-019 29889811-29902276 processed_transcript
  ENSMUST00000129960 Odf2-023 29903544-29914873 processed_transcript
  ENSMUST00000130899 Odf2-021 29891996-29901121 processed_transcript
  ENSMUST00000131165 Odf2-024 29912624-29915277 retained_intron
  ENSMUST00000133233 Odf2-016 29889815-29902246 protein_coding
  ENSMUST00000137558 Odf2-018 29889834-29904079 protein_coding
  ENSMUST00000148883 Odf2-015 29889234-29892577 retained_intron
  ENSMUST00000150827 Odf2-020 29890083-29890990 processed_transcript
  ENSMUST00000152026 Odf2-025 29925472-29926745 retained_intron
  ENSMUST00000152503 Odf2-013 29914394-29919195 retained_intron
  ENSMUST00000152932 Odf2-022 29903575-29915314 processed_transcript
  ENSMUST00000153216 Odf2-017 29889825-29901493 retained_intron
  ENSMUST00000184845 Odf2-005 29889798-29931095 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028128ENSMUST00000113755ENSMUST00000113756ENSMUST00000113757ENSMUST00000113759ENSMUST00000113767ENSMUST00000131165ENSMUST00000152026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1606.573±2323.42
ENSMUST00000113755 N/A N/A N/A 25.955±0.00 N/A N/A N/A N/A N/A N/A 0.789±0.00 14.941±12.99 8.647±1.10 N/A
ENSMUST00000113756 2.215±0.00 1.771±0.00 9.329±1.99 12.082±0.64 2.074±0.38 1.899±0.03 2.038±0.86 1.388±0.14 11.126±3.90 5.254±2.73 1.011±0.22 5.344±3.67 4.847±1.99 N/A
ENSMUST00000113757 N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00 N/A 0.629±0.21 6.743±0.00 3.786±0.26 N/A
ENSMUST00000113759 N/A N/A N/A N/A 1.969±0.00 N/A N/A N/A 3.563±1.50 N/A 0.919±0.48 3.087±1.14 2.283±0.05 N/A
ENSMUST00000113767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 224.575±2.47
ENSMUST00000131165 N/A N/A N/A 75.872±0.00 N/A N/A N/A N/A N/A N/A N/A 69.492±0.00 57.531±0.00 7024.470±0.00
ENSMUST00000152026 11.559±0.00 11.186±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E9 CIL_0007E9_0002 CGP 2:29869164-29931746
CIL_0007EC CIL_0007EC_0002 CGP 2:29889221-29960371

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001520 IEA outer dense fiber
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005813 IEA centrosome
GO:0005814 IDA centriole
GO:0005874 IEA microtubule
GO:0005929 IDA cilium
GO:0007275 IEA multicellular organismal development
GO:0007286 IEA spermatid development
GO:0017137 IEA Rab GTPase binding
GO:0036064 IEA ciliary basal body
GO:0072372 IEA primary cilium
GO:1902017 IEA regulation of cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020702 odf2b outer dense fiber of sperm tails 2b protein_coding Danio_rerio
ENSDARG00000028900 odf2a outer dense fiber of sperm tails 2a protein_coding Danio_rerio
ENSG00000136811 ODF2 outer dense fiber of sperm tails 2 protein_coding Homo_sapiens

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