C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: outer dense fiber of sperm tails 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434106 ODF2-011 ENSG00000136811 9606 + 9:128456422-128501292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000434106
Transcript ID Ovary
ENST00000434106 5.304±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E9 CIL_0007E9_0001 CGP 9:128411751-128501292
CIL_0007EC CIL_0007EC_0001 CGP 9:128455186-128542288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0001520 IEA outer dense fiber
GO:0005198 TAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005874 IEA microtubule
GO:0005929 IEA cilium
GO:0007275 IEA multicellular organismal development
GO:0007286 IEA spermatid development
GO:0017137 IPI Rab GTPase binding
GO:0036064 IDA ciliary basal body
GO:0072372 IDA primary cilium
GO:1902017 IMP regulation of cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113765 Odf2-006 protein_coding Mus_musculus 0 3672
ENSMUST00000046571 Odf2-001 protein_coding Mus_musculus 0 3142
ENSMUST00000113756 Odf2-002 protein_coding Mus_musculus 0 3142
ENSMUST00000113759 Odf2-003 protein_coding Mus_musculus 0 3127
ENSMUST00000113757 Odf2-004 protein_coding Mus_musculus 0 2939
ENSMUST00000113762 Odf2-011 protein_coding Mus_musculus 0 2933
ENSMUST00000113767 Odf2-007 protein_coding Mus_musculus 0 2536
ENSMUST00000113755 Odf2-008 protein_coding Mus_musculus 0 2390
ENSMUST00000184845 Odf2-005 nonsense_mediated_decay Mus_musculus 0 2390
ENSMUST00000113764 Odf2-012 protein_coding Mus_musculus 0 2187
ENSMUST00000028128 Odf2-009 protein_coding Mus_musculus 0 2187
ENSMUST00000113763 Odf2-010 protein_coding Mus_musculus 0 2187
ENSMUST00000152932 Odf2-022 processed_transcript Mus_musculus 0 885
ENSMUST00000137558 Odf2-018 protein_coding Mus_musculus 0 778
ENSMUST00000129960 Odf2-023 processed_transcript Mus_musculus 0 710
ENSMUST00000126103 Odf2-019 processed_transcript Mus_musculus 0 684
ENSMUST00000152503 Odf2-013 retained_intron Mus_musculus 0 525
ENSMUST00000131165 Odf2-024 retained_intron Mus_musculus 0 497
ENSMUST00000150827 Odf2-020 processed_transcript Mus_musculus 0 383
ENSMUST00000133233 Odf2-016 protein_coding Mus_musculus 0 342
ENSMUST00000152026 Odf2-025 retained_intron Mus_musculus 0 272
ENSMUST00000130899 Odf2-021 processed_transcript Mus_musculus 0 257
ENSMUST00000153216 Odf2-017 retained_intron Mus_musculus 0 252
ENSMUST00000123335 Odf2-014 protein_coding Mus_musculus 7e-35 154
ENSMUST00000148883 Odf2-015 retained_intron Mus_musculus 2e-34 152

Loading