C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136824 SMC2 9606 + 9:104094260-104141417 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286398 SMC2-201 104094260-104141409 protein_coding
  ENST00000374787 SMC2-002 104094564-104139651 protein_coding
  ENST00000374793 SMC2-001 104094326-104141417 protein_coding
  ENST00000440179 SMC2-004 104094296-104102193 protein_coding
  ENST00000493955 SMC2-003 104127407-104139652 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286398ENST00000374787ENST00000374793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286398 N/A N/A N/A 0.582±0.00 0.554±0.00 1.806±0.00 N/A N/A N/A N/A N/A 0.359±0.00 N/A N/A
ENST00000374787 0.496±0.00 0.292±0.00 0.654±0.00 0.735±0.20 1.948±0.00 0.549±0.00 0.808±0.05 0.708±0.00 0.259±0.00 0.626±0.00 0.139±0.00 6.919±0.00 4.730±0.00 4.757±3.70
ENST00000374793 1.386±0.00 1.334±0.00 0.321±0.00 1.090±0.34 0.886±0.55 1.324±0.00 1.406±0.00 1.420±0.39 0.464±0.00 0.473±0.15 0.590±0.00 1.921±0.53 1.162±0.37 3.037±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QK CIL_0001QK_0001 CGP 9:102995311-104141417

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000793 IDA condensed chromosome
GO:0000796 IEA:IDA condensin complex
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007076 IEA:IDA mitotic chromosome condensation
GO:0010032 IEA meiotic chromosome condensation
GO:0045132 IEA meiotic chromosome segregation
GO:0046982 IPI protein heterodimerization activity
GO:0051276 IEA chromosome organization
GO:0051383 IEA kinetochore organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017744 smc2 structural maintenance of chromosomes 2 protein_coding Danio_rerio
ENSMUSG00000028312 Smc2 structural maintenance of chromosomes 2 protein_coding Mus_musculus

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