C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028312 Smc2 10090 + 4:52439243-52488260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102915 Smc2-001 52439243-52488260 protein_coding
  ENSMUST00000117280 Smc2-002 52439243-52488260 protein_coding
  ENSMUST00000131163 Smc2-004 52439252-52447776 processed_transcript
  ENSMUST00000142227 Smc2-003 52439269-52458574 protein_coding
  ENSMUST00000146787 Smc2-005 52439266-52451328 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102915ENSMUST00000117280ENSMUST00000131163ENSMUST00000142227
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102915 0.123±0.03 2.617±1.07 0.172±0.00 1.684±0.49 0.520±0.27 1.208±0.20 0.155±0.08 0.329±0.13 4.077±4.77 0.416±0.25 N/A 1.155±0.67 2.673±1.44 1.288±0.32
ENSMUST00000117280 0.581±0.04 0.513±0.00 0.376±0.16 1.458±1.01 0.432±0.33 N/A 0.077±0.00 0.069±0.00 4.686±1.89 0.539±0.21 0.137±0.07 2.766±0.82 6.454±6.21 N/A
ENSMUST00000131163 1.567±0.97 0.929±0.00 N/A N/A 0.954±0.05 1.116±0.24 0.234±0.00 0.743±0.00 N/A 0.898±0.00 N/A N/A N/A 5.941±0.00
ENSMUST00000142227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 0.980±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QK CIL_0001QK_0002 CGP 4:51216678-52488260

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000793 IDA condensed chromosome
GO:0000796 IEA condensin complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007076 IEA mitotic chromosome condensation
GO:0010032 IMP meiotic chromosome condensation
GO:0045132 IMP meiotic chromosome segregation
GO:0046982 IEA protein heterodimerization activity
GO:0051383 IMP kinetochore organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017744 smc2 structural maintenance of chromosomes 2 protein_coding Danio_rerio
ENSG00000136824 SMC2 structural maintenance of chromosomes 2 protein_coding Homo_sapiens

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