C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374787 SMC2-002 ENSG00000136824 9606 + 9:104094564-104139651 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374787
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374787 0.496±0.00 0.292±0.00 0.654±0.00 0.735±0.20 1.948±0.00 0.549±0.00 0.808±0.05 0.708±0.00 0.259±0.00 0.626±0.00 0.139±0.00 6.919±0.00 4.730±0.00 4.757±3.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QK CIL_0001QK_0001 CGP 9:102995311-104141417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000793 IDA condensed chromosome
GO:0000796 IEA:IDA condensin complex
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007076 IEA:IDA mitotic chromosome condensation
GO:0046982 IPI protein heterodimerization activity
GO:0051276 IEA chromosome organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117280 Smc2-002 protein_coding Mus_musculus 0 4433
ENSMUST00000102915 Smc2-001 protein_coding Mus_musculus 0 4433
ENSMUST00000142227 Smc2-003 protein_coding Mus_musculus 0 1762
ENSMUST00000131163 Smc2-004 processed_transcript Mus_musculus 0 680
ENSDART00000109416 smc2-001 protein_coding Danio_rerio 0 348
ENSDART00000008616 smc2-201 protein_coding Danio_rerio 0 342

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