C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136840 ST6GALNAC4 9606 - 9:127907886-127917038 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335791 ST6GALNAC4-001 127907886-127917026 protein_coding
  ENST00000361444 ST6GALNAC4-004 127908447-127916996 protein_coding
  ENST00000467674 ST6GALNAC4-003 127908344-127917018 processed_transcript
  ENST00000474282 ST6GALNAC4-006 127908325-127912394 processed_transcript
  ENST00000479747 ST6GALNAC4-002 127915976-127917038 processed_transcript
  ENST00000483438 ST6GALNAC4-007 127912387-127914866 processed_transcript
  ENST00000495983 ST6GALNAC4-005 127908318-127914762 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335791ENST00000361444ENST00000474282ENST00000479747ENST00000483438ENST00000495983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335791 10.553±0.00 12.445±0.00 N/A 2.462±0.00 3.417±1.35 5.463±4.24 3.269±2.74 4.504±4.25 2.244±0.00 8.535±7.66 5.169±0.00 17.526±14.83 8.043±3.93 4.178±2.97
ENST00000361444 13.033±0.00 6.403±0.00 N/A 2.163±0.61 3.921±2.23 6.776±3.51 1.704±0.00 2.545±1.85 1.512±0.00 4.689±0.00 3.628±0.01 18.992±12.99 6.014±1.81 5.358±0.56
ENST00000474282 N/A N/A 0.403±0.00 N/A N/A N/A 0.660±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000479747 N/A N/A N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000483438 N/A N/A 2.447±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495983 N/A 3.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.911±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CF CIL_0002CF_0002 CGP 9:127885321-127917038

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0006664 TAS glycolipid metabolic process
GO:0008373 IEA:TAS sialyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0047290 IEA (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043897 st6galnac4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein_coding Danio_rerio
ENSMUSG00000079442 St6galnac4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein_coding Mus_musculus

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