C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335791 ST6GALNAC4-001 ENSG00000136840 9606 - 9:127907886-127917026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335791
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335791 10.553±0.00 12.445±0.00 2.462±0.00 3.417±1.35 5.463±4.24 3.269±2.74 4.504±4.25 2.244±0.00 8.535±7.66 5.169±0.00 17.526±14.83 8.043±3.93 4.178±2.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CF CIL_0002CF_0002 CGP 9:127885321-127917038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0006664 TAS glycolipid metabolic process
GO:0008373 IEA:TAS sialyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0047290 IEA (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102818 St6galnac4-001 protein_coding Mus_musculus 0 1026
ENSMUST00000179989 St6galnac4-201 protein_coding Mus_musculus 0 1018
ENSMUST00000123080 St6galnac4-002 processed_transcript Mus_musculus 0 521
ENSMUST00000146557 St6galnac4-003 processed_transcript Mus_musculus 0 327

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