C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136874 STX17 9606 + 9:99906633-99970341 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259400 STX17-001 99906633-99970341 protein_coding
  ENST00000524405 STX17-004 99906696-99968748 nonsense_mediated_decay
  ENST00000525342 STX17-010 99906678-99959953 nonsense_mediated_decay
  ENST00000525579 STX17-011 99928778-99954043 processed_transcript
  ENST00000525640 STX17-002 99906709-99969540 protein_coding
  ENST00000525847 STX17-012 99937908-99968612 processed_transcript
  ENST00000526607 STX17-006 99906742-99915362 protein_coding
  ENST00000529340 STX17-005 99906671-99968520 nonsense_mediated_decay
  ENST00000529385 STX17-009 99967270-99968821 retained_intron
  ENST00000531035 STX17-007 99906677-99951184 protein_coding
  ENST00000533696 STX17-008 99906673-99929169 retained_intron
  ENST00000534052 STX17-003 99906712-99969540 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259400ENST00000525847ENST00000534052
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259400 2.455±0.00 0.583±0.00 3.406±0.00 2.190±0.00 1.826±0.58 1.254±0.54 4.037±1.45 2.242±1.13 1.511±0.21 1.825±0.35 2.183±0.00 2.523±0.91 3.132±0.01
ENST00000525847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.891±0.00
ENST00000534052 N/A N/A 0.860±0.00 N/A N/A N/A N/A N/A N/A 4.202±0.00 N/A N/A 1.296±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H8 CIL_0007H8_0002 CGP 9:99821855-99970341
CIL_0007A7 CIL_0007A7_0002 CGP 9:99906633-100099040

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000046 IEA:IMP autophagic vacuole fusion
GO:0000149 IEA:IBA SNARE binding
GO:0000421 IDA autophagic vacuole membrane
GO:0005484 IBA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 ISS cytosol
GO:0006886 IBA intracellular protein transport
GO:0006887 IBA exocytosis
GO:0006888 IEA:IMP ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019901 IEA protein kinase binding
GO:0019903 IPI protein phosphatase binding
GO:0030134 ISS ER to Golgi transport vesicle
GO:0030868 ISS smooth endoplasmic reticulum membrane
GO:0031201 IBA SNARE complex
GO:0034497 IDA protein localization to pre-autophagosomal structure
GO:0044233 IDA ER-mitochondrion membrane contact site
GO:0097111 IEA:IMP endoplasmic reticulum-Golgi intermediate compartment organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006869 stx17 syntaxin 17 protein_coding Danio_rerio
ENSMUSG00000061455 Stx17 syntaxin 17 protein_coding Mus_musculus

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