C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259400 STX17-001 ENSG00000136874 9606 + 9:99906633-99970341 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259400
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259400 2.455±0.00 0.583±0.00 3.406±0.00 2.190±0.00 1.826±0.58 1.254±0.54 4.037±1.45 2.242±1.13 1.511±0.21 1.825±0.35 2.183±0.00 2.523±0.91 3.132±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H8 CIL_0007H8_0002 CGP 9:99821855-99970341
CIL_0007A7 CIL_0007A7_0002 CGP 9:99906633-100099040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000046 IEA:IMP autophagic vacuole fusion
GO:0000149 IEA:IBA SNARE binding
GO:0000421 IDA autophagic vacuole membrane
GO:0005484 IBA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 ISS cytosol
GO:0006886 IBA intracellular protein transport
GO:0006887 IBA exocytosis
GO:0006888 IEA:IMP ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019901 IEA protein kinase binding
GO:0019903 IPI protein phosphatase binding
GO:0030134 ISS ER to Golgi transport vesicle
GO:0030868 ISS smooth endoplasmic reticulum membrane
GO:0031201 IBA SNARE complex
GO:0034497 IDA protein localization to pre-autophagosomal structure
GO:0044233 IDA ER-mitochondrion membrane contact site
GO:0097111 IEA:IMP endoplasmic reticulum-Golgi intermediate compartment organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107720 Stx17-001 protein_coding Mus_musculus 0 1112
ENSMUST00000064765 Stx17-003 protein_coding Mus_musculus 0 1101
ENSMUST00000107721 Stx17-004 protein_coding Mus_musculus 0 580

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