C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007H8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055854-ENSDARG00000006869 CGP 7955 16:29573622-29633699
GeneTranscriptPositionBiotype
ENSDARG00000006869 (stx17)
syntaxin 17 		ENSDART00000132329 (stx17-001) 29611956-29633699 protein_coding
ENSDART00000136256 (stx17-002) 29611971-29621108 protein_coding
ENSDARG00000055854 (nr4a3)
nuclear receptor subfamily 4, group A, member 3 		ENSDART00000078250 (nr4a3-001) 29573622-29597577 protein_coding
ENSDART00000142573 (nr4a3-002) 29577824-29591484 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007H8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119508-ENSG00000136874 CGP 9606 9:99821855-99970341
GeneTranscriptPositionBiotype
ENSG00000119508 (NR4A3)
nuclear receptor subfamily 4, group A, member 3 		ENST00000330847 (NR4A3-003) 99826727-99866891 protein_coding
ENST00000338488 (NR4A3-002) 99821855-99834059 protein_coding
ENST00000395097 (NR4A3-001) 99821855-99865051 protein_coding
ENST00000618101 (NR4A3-201) 99821855-99866891 protein_coding
ENSG00000136874 (STX17)
syntaxin 17 		ENST00000259400 (STX17-001) 99906633-99970341 protein_coding
ENST00000524405 (STX17-004) 99906696-99968748 nonsense_mediated_decay
ENST00000525342 (STX17-010) 99906678-99959953 nonsense_mediated_decay
ENST00000525579 (STX17-011) 99928778-99954043 processed_transcript
ENST00000525640 (STX17-002) 99906709-99969540 protein_coding
ENST00000525847 (STX17-012) 99937908-99968612 processed_transcript
ENST00000526607 (STX17-006) 99906742-99915362 protein_coding
ENST00000529340 (STX17-005) 99906671-99968520 nonsense_mediated_decay
ENST00000529385 (STX17-009) 99967270-99968821 retained_intron
ENST00000531035 (STX17-007) 99906677-99951184 protein_coding
ENST00000533696 (STX17-008) 99906673-99929169 retained_intron
ENST00000534052 (STX17-003) 99906712-99969540 protein_coding
ENSG00000255145 (STX17-AS1)
STX17 antisense RNA 1 		ENST00000529965 (STX17-AS1-001) 99886322-99906601 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007H8_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028341-ENSMUSG00000061455 CGP 10090 4:48045153-48186507
GeneTranscriptPositionBiotype
ENSMUSG00000028341 (Nr4a3)
nuclear receptor subfamily 4, group A, member 3 		ENSMUST00000030025 (Nr4a3-001) 48045153-48086445 protein_coding
ENSMUST00000133539 (Nr4a3-003) 48051248-48056739 processed_transcript
ENSMUST00000153369 (Nr4a3-004) 48049114-48086447 protein_coding
ENSMUST00000154186 (Nr4a3-002) 48045231-48050165 processed_transcript
ENSMUSG00000061455 (Stx17)
syntaxin 17 		ENSMUST00000064765 (Stx17-003) 48124935-48182231 protein_coding
ENSMUST00000107720 (Stx17-001) 48124926-48186507 protein_coding
ENSMUST00000107721 (Stx17-004) 48124915-48185911 protein_coding
ENSMUST00000153502 (Stx17-002) 48124923-48159033 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007H8_0001ENSDARG00000006869ENSDART00000132329ENSDART00000136256ENSDARG00000055854ENSDART00000078250ENSDART00000142573CIL_0007H8_0002ENSG00000119508ENST00000330847ENST00000338488ENST00000395097ENST00000618101ENSG00000136874ENST00000259400ENST00000524405ENST00000525342ENST00000525579ENST00000525640ENST00000525847ENST00000526607ENST00000529340ENST00000529385ENST00000531035ENST00000533696ENST00000534052ENSG00000255145ENST00000529965CIL_0007H8_0003ENSMUSG00000028341ENSMUST00000030025ENSMUST00000133539ENSMUST00000153369ENSMUST00000154186ENSMUSG00000061455ENSMUST00000064765ENSMUST00000107720ENSMUST00000107721ENSMUST00000153502
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007H8_0001ENSDARG00000006869ENSDART00000132329ENSDART00000136256ENSDARG00000055854ENSDART00000078250CIL_0007H8_0002ENSG00000119508ENST00000330847ENST00000338488ENST00000395097ENST00000618101ENSG00000136874ENST00000259400ENST00000525847ENST00000534052ENSG00000255145ENST00000529965CIL_0007H8_0003ENSMUSG00000028341ENSMUST00000030025ENSMUST00000133539ENSMUST00000153369ENSMUST00000154186ENSMUSG00000061455ENSMUST00000064765ENSMUST00000107720ENSMUST00000153502
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006869 ENSDART00000132329 N/A N/A N/A 0.481±0.08 N/A N/A 1.092±0.00 2.003±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000136256 N/A N/A N/A N/A N/A N/A N/A 3.052±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000055854 ENSDART00000078250 N/A N/A N/A 0.960±0.00 N/A N/A 15.622±14.48 0.904±0.00 0.136±0.00 N/A 3.896±0.00 N/A N/A N/A
ENSDART00000142573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119508 ENST00000330847 N/A N/A N/A 0.525±0.00 0.827±0.35 0.398±0.00 N/A N/A 0.026±0.00 N/A N/A 7.094±6.63 0.191±0.07 0.280±0.00
ENST00000338488 N/A N/A 2.465±0.00 0.996±0.00 N/A 0.472±0.00 0.528±0.00 N/A 2.060±0.00 N/A 8.059±0.00 N/A N/A N/A
ENST00000395097 N/A N/A 0.731±0.00 N/A N/A N/A 3.815±0.00 N/A N/A 0.719±0.00 7.099±0.00 3.932±2.84 0.163±0.03 0.791±0.00
ENST00000618101 N/A N/A N/A 0.377±0.00 0.298±0.00 0.362±0.00 6.644±0.00 N/A 0.060±0.00 14.244±0.00 N/A N/A 0.542±0.24 N/A
ENSG00000136874 ENST00000259400 2.455±0.00 N/A 0.583±0.00 3.406±0.00 2.190±0.00 1.826±0.58 1.254±0.54 4.037±1.45 2.242±1.13 1.511±0.21 1.825±0.35 2.183±0.00 2.523±0.91 3.132±0.01
ENST00000524405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.891±0.00
ENST00000526607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534052 N/A N/A N/A 0.860±0.00 N/A N/A N/A N/A N/A N/A 4.202±0.00 N/A N/A 1.296±0.00
ENSG00000255145 ENST00000529965 0.113±0.00 0.136±0.00 0.476±0.00 0.564±0.18 0.194±0.04 0.272±0.03 0.376±0.00 0.378±0.00 0.403±0.02 0.473±0.20 0.158±0.00 0.510±0.22 0.256±0.16 1.274±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028341 ENSMUST00000030025 0.149±0.07 7.170±3.57 0.636±0.09 1.686±0.28 0.371±0.23 0.346±0.11 0.256±0.09 0.084±0.04 0.005±0.00 0.617±0.25 0.493±0.27 0.279±0.17 0.082±0.02 0.176±0.11
ENSMUST00000133539 0.129±0.00 10.295±2.56 N/A N/A 1.332±0.00 0.290±0.00 N/A 0.072±0.04 0.015±0.01 0.646±0.00 N/A 0.465±0.10 N/A 0.524±0.05
ENSMUST00000153369 0.164±0.00 N/A 0.331±0.05 0.779±0.00 0.354±0.17 N/A 0.109±0.00 0.123±0.00 0.008±0.00 N/A 0.240±0.10 0.426±0.51 0.102±0.06 0.048±0.00
ENSMUST00000154186 N/A N/A N/A N/A 0.839±0.00 0.327±0.00 N/A 0.117±0.05 0.016±0.01 N/A N/A 0.464±0.00 N/A N/A
ENSMUSG00000061455 ENSMUST00000064765 N/A N/A N/A 4.611±0.00 N/A N/A N/A N/A N/A N/A N/A 8.695±0.00 4.352±1.49 11.143±9.11
ENSMUST00000107720 5.115±0.58 4.195±3.00 8.919±0.27 2.698±1.31 4.004±1.31 4.341±1.12 3.722±0.41 3.158±0.39 4.339±1.44 5.503±0.80 5.840±0.55 3.900±2.11 2.049±0.74 1.725±0.59
ENSMUST00000107721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153502 N/A N/A N/A 6.965±0.00 N/A N/A N/A N/A N/A N/A N/A 9.745±0.00 5.205±0.78 29.198±0.00

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