C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007A7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006869-ENSDARG00000019008 CGP 7955 16:29611956-29670583
GeneTranscriptPositionBiotype
ENSDARG00000006869 (stx17)
syntaxin 17 		ENSDART00000132329 (stx17-001) 29611956-29633699 protein_coding
ENSDART00000136256 (stx17-002) 29611971-29621108 protein_coding
ENSDARG00000019008 (erp44)
endoplasmic reticulum protein 44 		ENSDART00000027545 (erp44-001) 29645439-29670583 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007A7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136874-ENSG00000023318 CGP 9606 9:99906633-100099040
GeneTranscriptPositionBiotype
ENSG00000023318 (ERP44)
endoplasmic reticulum protein 44 		ENST00000262455 (ERP44-001) 99979179-100099040 protein_coding
ENSG00000136874 (STX17)
syntaxin 17 		ENST00000259400 (STX17-001) 99906633-99970341 protein_coding
ENST00000524405 (STX17-004) 99906696-99968748 nonsense_mediated_decay
ENST00000525342 (STX17-010) 99906678-99959953 nonsense_mediated_decay
ENST00000525579 (STX17-011) 99928778-99954043 processed_transcript
ENST00000525640 (STX17-002) 99906709-99969540 protein_coding
ENST00000525847 (STX17-012) 99937908-99968612 processed_transcript
ENST00000526607 (STX17-006) 99906742-99915362 protein_coding
ENST00000529340 (STX17-005) 99906671-99968520 nonsense_mediated_decay
ENST00000529385 (STX17-009) 99967270-99968821 retained_intron
ENST00000531035 (STX17-007) 99906677-99951184 protein_coding
ENST00000533696 (STX17-008) 99906673-99929169 retained_intron
ENST00000534052 (STX17-003) 99906712-99969540 protein_coding
ENSG00000234709 (UPF3AP3)
UPF3A pseudogene 3 		ENST00000420996 (UPF3AP3-001) 99998301-99999069 transcribed_processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0007A7_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061455-ENSMUSG00000028343 CGP 10090 4:48124915-48279558
GeneTranscriptPositionBiotype
ENSMUSG00000028343 (Erp44)
endoplasmic reticulum protein 44 		ENSMUST00000030028 (Erp44-001) 48193323-48279558 protein_coding
ENSMUST00000132927 (Erp44-004) 48238249-48244474 processed_transcript
ENSMUST00000138743 (Erp44-002) 48194490-48197024 processed_transcript
ENSMUST00000148947 (Erp44-003) 48240892-48279452 processed_transcript
ENSMUSG00000061455 (Stx17)
syntaxin 17 		ENSMUST00000064765 (Stx17-003) 48124935-48182231 protein_coding
ENSMUST00000107720 (Stx17-001) 48124926-48186507 protein_coding
ENSMUST00000107721 (Stx17-004) 48124915-48185911 protein_coding
ENSMUST00000153502 (Stx17-002) 48124923-48159033 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007A7_0001ENSDARG00000006869ENSDART00000132329ENSDART00000136256ENSDARG00000019008ENSDART00000027545CIL_0007A7_0002ENSG00000023318ENST00000262455ENSG00000136874ENST00000259400ENST00000524405ENST00000525342ENST00000525579ENST00000525640ENST00000525847ENST00000526607ENST00000529340ENST00000529385ENST00000531035ENST00000533696ENST00000534052ENSG00000234709ENST00000420996CIL_0007A7_0003ENSMUSG00000028343ENSMUST00000030028ENSMUST00000132927ENSMUST00000138743ENSMUST00000148947ENSMUSG00000061455ENSMUST00000064765ENSMUST00000107720ENSMUST00000107721ENSMUST00000153502
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007A7_0001ENSDARG00000006869ENSDART00000132329ENSDART00000136256ENSDARG00000019008ENSDART00000027545CIL_0007A7_0002ENSG00000023318ENST00000262455ENSG00000136874ENST00000259400ENST00000525847ENST00000534052ENSG00000234709ENST00000420996CIL_0007A7_0003ENSMUSG00000028343ENSMUST00000030028ENSMUST00000138743ENSMUSG00000061455ENSMUST00000064765ENSMUST00000107720ENSMUST00000153502
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006869 ENSDART00000132329 N/A N/A N/A 0.481±0.08 N/A N/A 1.092±0.00 2.003±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000136256 N/A N/A N/A N/A N/A N/A N/A 3.052±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000019008 ENSDART00000027545 N/A N/A N/A 16.619±10.05 N/A N/A 22.598±22.24 16.144±17.35 3.959±0.00 N/A 14.469±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000023318 ENST00000262455 8.423±0.00 8.085±0.00 2.021±0.00 3.697±0.02 5.526±1.42 6.207±2.58 3.075±1.51 7.782±2.98 8.303±5.66 5.019±4.23 3.975±0.00 5.627±2.26 12.898±3.60 7.031±1.68
ENSG00000136874 ENST00000259400 2.455±0.00 N/A 0.583±0.00 3.406±0.00 2.190±0.00 1.826±0.58 1.254±0.54 4.037±1.45 2.242±1.13 1.511±0.21 1.825±0.35 2.183±0.00 2.523±0.91 3.132±0.01
ENST00000524405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.891±0.00
ENST00000526607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534052 N/A N/A N/A 0.860±0.00 N/A N/A N/A N/A N/A N/A 4.202±0.00 N/A N/A 1.296±0.00
ENSG00000234709 ENST00000420996 N/A 0.478±0.00 0.610±0.00 0.397±0.00 0.207±0.07 0.381±0.27 0.066±0.00 0.382±0.09 0.246±0.18 0.256±0.00 N/A 0.425±0.42 0.675±0.62 0.476±0.38
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028343 ENSMUST00000030028 8.558±1.87 73.268±8.97 8.684±0.16 9.460±3.94 13.028±3.79 20.698±3.04 5.805±0.81 14.230±2.75 18.892±6.46 14.212±3.21 7.712±0.48 18.177±7.53 26.956±7.63 9.156±3.28
ENSMUST00000132927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138743 N/A N/A N/A 11.370±0.00 N/A N/A N/A N/A N/A N/A N/A 29.771±0.00 74.956±29.07 19.772±0.00
ENSMUST00000148947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061455 ENSMUST00000064765 N/A N/A N/A 4.611±0.00 N/A N/A N/A N/A N/A N/A N/A 8.695±0.00 4.352±1.49 11.143±9.11
ENSMUST00000107720 5.115±0.58 4.195±3.00 8.919±0.27 2.698±1.31 4.004±1.31 4.341±1.12 3.722±0.41 3.158±0.39 4.339±1.44 5.503±0.80 5.840±0.55 3.900±2.11 2.049±0.74 1.725±0.59
ENSMUST00000107721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153502 N/A N/A N/A 6.965±0.00 N/A N/A N/A N/A N/A N/A N/A 9.745±0.00 5.205±0.78 29.198±0.00

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