C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide E, 53kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137054 POLR1E 9606 + 9:37485935-37503697 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377792 POLR1E-002 37486153-37503697 protein_coding
  ENST00000377798 POLR1E-001 37485935-37503697 protein_coding
  ENST00000442009 POLR1E-201 37485935-37503696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377792ENST00000377798ENST00000442009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377792 N/A N/A N/A N/A 1.391±0.00 1.030±0.00 N/A N/A N/A 0.759±0.00 N/A 1.419±0.00 N/A N/A
ENST00000377798 5.069±0.00 8.715±0.00 1.087±0.00 4.729±1.75 5.266±4.33 7.214±4.46 2.339±1.43 3.188±0.55 5.533±1.39 5.782±4.17 6.421±4.26 10.619±5.15 6.699±0.72 8.081±2.94
ENST00000442009 N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000843 CIL_000843_0001 VISTA 9:36915019-37515778
CIL_0008YP CIL_0008YP_0001 VISTA 9:36951210-37552226
CIL_00080S CIL_00080S_0001 VISTA 9:37036633-37638309
CIL_0001OS CIL_0001OS_0001 CGP 9:37438114-37503697
CIL_00039W CIL_00039W_0001 CGP 9:37485935-37576349

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001179 IEA RNA polymerase I transcription factor binding
GO:0001189 IEA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006351 IEA transcription, DNA-templated
GO:0009303 ISS rRNA transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006434 polr1e polymerase (RNA) I polypeptide E protein_coding Danio_rerio
ENSMUSG00000028318 Polr1e polymerase (RNA) I polypeptide E protein_coding Mus_musculus

Loading