C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide E
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028318 Polr1e 10090 + 4:45018583-45036565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029999 Polr1e-003 45018662-45032365 protein_coding
  ENSMUST00000054723 Polr1e-005 45019235-45032112 protein_coding
  ENSMUST00000107814 Polr1e-002 45018663-45036565 protein_coding
  ENSMUST00000133157 Polr1e-001 45018583-45033692 protein_coding
  ENSMUST00000149284 Polr1e-004 45018697-45026870 processed_transcript
  ENSMUST00000150663 Polr1e-006 45029144-45031385 processed_transcript
  ENSMUST00000153252 Polr1e-007 45031262-45032360 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029999ENSMUST00000054723ENSMUST00000107814ENSMUST00000133157ENSMUST00000149284ENSMUST00000150663ENSMUST00000153252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029999 1.669±0.44 2.166±1.18 1.772±0.21 N/A 1.519±0.02 1.687±0.51 3.692±0.59 1.810±0.54 1.049±0.65 N/A 0.414±0.20 4.174±0.00 3.358±2.47 0.980±0.26
ENSMUST00000054723 N/A N/A 1.680±0.78 2.566±0.00 1.161±0.00 N/A N/A N/A 2.552±1.68 N/A 0.903±0.31 4.704±2.17 4.307±3.29 1.809±0.45
ENSMUST00000107814 0.818±0.00 2.536±1.32 1.147±0.36 3.313±0.33 1.584±0.64 1.842±0.85 2.281±0.71 1.155±0.21 0.798±0.27 1.456±0.24 0.400±0.02 2.691±1.01 2.365±0.04 1.685±0.97
ENSMUST00000133157 0.928±0.26 N/A 0.981±0.15 1.675±0.96 1.230±0.59 1.089±0.47 1.007±0.14 0.837±0.53 0.844±0.64 0.799±0.19 0.205±0.07 2.840±1.93 0.375±0.00 1.303±0.19
ENSMUST00000149284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.077±0.00 N/A N/A
ENSMUST00000150663 N/A N/A N/A N/A N/A 2.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153252 N/A N/A N/A 1.645±0.00 N/A N/A N/A N/A 4.647±0.00 N/A 0.718±0.17 4.531±1.56 5.091±1.85 0.501±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000843 CIL_000843_0002 VISTA 4:44530265-45131018
CIL_0008YP CIL_0008YP_0002 VISTA 4:44551630-45152605
CIL_00080S CIL_00080S_0002 VISTA 4:44617363-45218981
CIL_0001OS CIL_0001OS_0002 CGP 4:44991242-45036565
CIL_00039W CIL_00039W_0002 CGP 4:45018583-45084604

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001179 IDA RNA polymerase I transcription factor binding
GO:0001189 IDA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006434 polr1e polymerase (RNA) I polypeptide E protein_coding Danio_rerio
ENSG00000137054 POLR1E polymerase (RNA) I polypeptide E, 53kDa protein_coding Homo_sapiens

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