C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide E, 53kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377798 POLR1E-001 ENSG00000137054 9606 + 9:37485935-37503697 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377798 5.069±0.00 8.715±0.00 1.087±0.00 4.729±1.75 5.266±4.33 7.214±4.46 2.339±1.43 3.188±0.55 5.533±1.39 5.782±4.17 6.421±4.26 10.619±5.15 6.699±0.72 8.081±2.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000843 CIL_000843_0001 VISTA 9:36915019-37515778
CIL_0008YP CIL_0008YP_0001 VISTA 9:36951210-37552226
CIL_00080S CIL_00080S_0001 VISTA 9:37036633-37638309
CIL_0001OS CIL_0001OS_0001 CGP 9:37438114-37503697
CIL_00039W CIL_00039W_0001 CGP 9:37485935-37576349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001179 IEA RNA polymerase I transcription factor binding
GO:0001189 IEA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006351 IEA transcription, DNA-templated
GO:0009303 ISS rRNA transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133157 Polr1e-001 protein_coding Mus_musculus 0 1035
ENSMUST00000054723 Polr1e-005 protein_coding Mus_musculus 0 989
ENSMUST00000107814 Polr1e-002 protein_coding Mus_musculus 0 894
ENSMUST00000029999 Polr1e-003 protein_coding Mus_musculus 0 324
ENSMUST00000149284 Polr1e-004 processed_transcript Mus_musculus 0 289

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