C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAFB-like, transcription modulator
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137776 SLTM 9606 - 15:58879045-58933653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249736 SLTM-014 58894158-58933579 protein_coding
  ENST00000380516 SLTM-001 58879045-58933653 protein_coding
  ENST00000432750 SLTM-009 58879419-58897120 protein_coding
  ENST00000473359 SLTM-010 58894189-58897564 retained_intron
  ENST00000474342 SLTM-006 58932152-58933616 retained_intron
  ENST00000480144 SLTM-007 58897982-58933600 retained_intron
  ENST00000484498 SLTM-004 58916574-58933574 retained_intron
  ENST00000492526 SLTM-002 58879429-58933579 nonsense_mediated_decay
  ENST00000493062 SLTM-008 58879432-58887124 retained_intron
  ENST00000497088 SLTM-005 58893926-58899083 retained_intron
  ENST00000557791 SLTM-021 58887457-58889490 protein_coding
  ENST00000557924 SLTM-011 58879560-58933599 nonsense_mediated_decay
  ENST00000557950 SLTM-018 58900417-58933558 processed_transcript
  ENST00000558052 SLTM-023 58883479-58888422 retained_intron
  ENST00000558486 SLTM-017 58899705-58933574 protein_coding
  ENST00000558734 SLTM-024 58889144-58893292 retained_intron
  ENST00000558756 SLTM-019 58894090-58933449 nonsense_mediated_decay
  ENST00000559261 SLTM-013 58913499-58933600 nonsense_mediated_decay
  ENST00000559305 SLTM-016 58894459-58933576 nonsense_mediated_decay
  ENST00000559880 SLTM-012 58899611-58933594 protein_coding
  ENST00000560012 SLTM-003 58913557-58933581 processed_transcript
  ENST00000560494 SLTM-025 58879425-58887007 protein_coding
  ENST00000560532 SLTM-020 58900968-58912801 retained_intron
  ENST00000560682 SLTM-015 58899791-58933576 protein_coding
  ENST00000560695 SLTM-022 58887292-58888729 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249736ENST00000380516ENST00000432750ENST00000493062ENST00000557924ENST00000558052ENST00000559880
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.782±0.00 N/A N/A N/A
ENST00000380516 6.464±0.00 9.659±0.00 2.230±0.00 4.699±2.28 5.262±0.50 5.256±0.13 4.281±3.15 6.232±1.31 3.869±0.37 2.632±0.00 4.570±0.00 9.920±8.13 7.762±6.97 17.789±7.14
ENST00000432750 N/A 7.639±0.00 N/A 3.794±0.00 4.259±0.00 3.524±0.00 6.950±0.00 8.699±0.00 N/A 5.029±0.00 5.145±0.00 14.086±9.72 7.687±6.33 18.920±12.21
ENST00000493062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.751±0.00 N/A
ENST00000557924 2.716±0.00 N/A N/A 4.694±0.00 N/A N/A 2.723±0.00 N/A N/A N/A 5.253±0.00 8.250±0.00 12.606±0.00 9.895±0.00
ENST00000558052 N/A N/A 16.566±0.00 N/A 19.320±0.00 22.273±0.00 N/A 12.445±0.00 10.833±0.00 N/A N/A 18.587±0.00 N/A N/A
ENST00000559880 N/A N/A 9.077±0.00 10.674±0.00 N/A N/A 5.126±0.00 N/A 8.735±0.00 14.380±0.00 2.269±0.00 N/A N/A 33.873±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0001 CGP 15:58865175-59097419

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052728 sltm SAFB-like, transcription modulator protein_coding Danio_rerio
ENSMUSG00000032212 Sltm SAFB-like, transcription modulator protein_coding Mus_musculus

Loading