C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stimulated by retinoic acid 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137868 STRA6 9606 - 15:74179466-74212267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323940 STRA6-002 74179466-74209030 protein_coding
  ENST00000395105 STRA6-001 74179466-74202879 protein_coding
  ENST00000416286 STRA6-009 74179466-74212267 protein_coding
  ENST00000423167 STRA6-007 74179466-74208969 protein_coding
  ENST00000432245 STRA6-003 74194387-74208978 protein_coding
  ENST00000449139 STRA6-010 74179466-74212225 protein_coding
  ENST00000535552 STRA6-008 74179815-74209705 protein_coding
  ENST00000545137 STRA6-006 74179469-74196289 retained_intron
  ENST00000563965 STRA6-005 74179975-74202858 protein_coding
  ENST00000569936 STRA6-004 74182448-74203092 nonsense_mediated_decay
  ENST00000571341 STRA6-015 74197338-74202450 protein_coding
  ENST00000572785 STRA6-019 74180142-74189233 protein_coding
  ENST00000572975 STRA6-017 74190885-74192008 retained_intron
  ENST00000573214 STRA6-020 74195585-74202450 retained_intron
  ENST00000573391 STRA6-013 74197339-74203056 nonsense_mediated_decay
  ENST00000573456 STRA6-016 74195423-74202503 processed_transcript
  ENST00000573724 STRA6-021 74195331-74202405 retained_intron
  ENST00000574278 STRA6-011 74180002-74208054 protein_coding
  ENST00000574439 STRA6-012 74179469-74203215 processed_transcript
  ENST00000574570 STRA6-014 74196104-74202849 processed_transcript
  ENST00000575272 STRA6-018 74182227-74182878 retained_intron
  ENST00000616000 STRA6-201 74179469-74203215 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000323940ENST00000395105ENST00000423167ENST00000432245ENST00000449139ENST00000545137ENST00000569936ENST00000572785
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000323940 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.499±0.62 N/A N/A
ENST00000395105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.893±0.00 N/A
ENST00000423167 N/A 0.438±0.00 N/A N/A N/A N/A N/A N/A N/A 1.908±1.18 N/A N/A
ENST00000432245 N/A N/A 0.366±0.00 N/A N/A N/A 0.089±0.00 N/A N/A 1.956±0.00 N/A N/A
ENST00000449139 N/A 0.938±0.00 N/A 0.142±0.00 N/A N/A 0.489±0.00 N/A N/A 1.018±0.13 20.680±1.06 1.183±0.00
ENST00000545137 N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A N/A 6.265±0.00 1.910±0.00
ENST00000569936 0.145±0.00 N/A N/A 0.473±0.00 0.187±0.00 0.064±0.00 N/A 0.051±0.02 0.048±0.00 N/A N/A N/A
ENST00000572785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.075±0.00 5.183±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001568 IMP blood vessel development
GO:0001822 IMP kidney development
GO:0003184 IMP pulmonary valve morphogenesis
GO:0003281 IMP ventricular septum development
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007507 IMP heart development
GO:0007603 TAS phototransduction, visible light
GO:0007612 IMP learning
GO:0007631 IMP feeding behavior
GO:0016021 IEA integral component of membrane
GO:0030324 IMP lung development
GO:0030325 IMP adrenal gland development
GO:0030540 IMP female genitalia development
GO:0034633 IEA retinol transport
GO:0042297 IMP vocal learning
GO:0042573 IEA retinoic acid metabolic process
GO:0043234 IDA protein complex
GO:0043583 IMP ear development
GO:0043585 IMP nose morphogenesis
GO:0046427 IEA positive regulation of JAK-STAT cascade
GO:0048286 IMP lung alveolus development
GO:0048520 IMP positive regulation of behavior
GO:0048546 IMP digestive tract morphogenesis
GO:0048566 IMP embryonic digestive tract development
GO:0048589 IMP developmental growth
GO:0048745 IMP smooth muscle tissue development
GO:0048844 IMP artery morphogenesis
GO:0050890 IMP cognition
GO:0050905 IMP neuromuscular process
GO:0051180 IEA vitamin transport
GO:0051183 IEA vitamin transporter activity
GO:0060322 IMP head development
GO:0060323 IMP head morphogenesis
GO:0060325 IMP face morphogenesis
GO:0060426 IMP lung vasculature development
GO:0060539 IMP diaphragm development
GO:0060900 IMP embryonic camera-type eye formation
GO:0061029 IMP eyelid development in camera-type eye
GO:0061038 IMP uterus morphogenesis
GO:0061143 IMP alveolar primary septum development
GO:0061156 IMP pulmonary artery morphogenesis
GO:0061205 IMP paramesonephric duct development
GO:0071939 IEA vitamin A import
GO:0097070 IMP ductus arteriosus closure

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051874 stra6 stimulated by retinoic acid gene 6 homolog (mouse) protein_coding Danio_rerio
ENSMUSG00000032327 Stra6 stimulated by retinoic acid gene 6 protein_coding Mus_musculus

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