C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stimulated by retinoic acid gene 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032327 Stra6 10090 + 9:58063788-58153996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034880 Stra6-002 58129349-58153953 protein_coding
  ENSMUST00000085677 Stra6-001 58129088-58153955 protein_coding
  ENSMUST00000128021 Stra6-011 58079385-58139435 protein_coding
  ENSMUST00000128378 Stra6-008 58134535-58141118 protein_coding
  ENSMUST00000133287 Stra6-004 58129501-58140871 protein_coding
  ENSMUST00000134450 Stra6-010 58134810-58139366 protein_coding
  ENSMUST00000134955 Stra6-006 58134017-58141196 protein_coding
  ENSMUST00000136154 Stra6-012 58079310-58141222 protein_coding
  ENSMUST00000136338 Stra6-005 58131897-58140444 protein_coding
  ENSMUST00000145886 Stra6-003 58063788-58142031 retained_intron
  ENSMUST00000147134 Stra6-007 58134075-58141112 protein_coding
  ENSMUST00000150820 Stra6-009 58134665-58141128 protein_coding
  ENSMUST00000167479 Stra6-201 58134665-58153996 protein_coding
  ENSMUST00000170397 Stra6-202 58134075-58153996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085677ENSMUST00000167479ENSMUST00000170397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085677 7.217±8.13 0.525±0.26 0.065±0.00 2.510±0.39 2.536±1.17 0.880±0.40 0.297±0.04 3.950±2.16 0.022±0.01 0.292±0.02 0.088±0.05 7.700±2.52 20.583±12.23 1.532±0.73
ENSMUST00000167479 4.271±0.00 0.320±0.00 N/A 1.950±0.62 0.586±0.00 0.368±0.07 N/A 1.913±0.00 0.019±0.00 N/A N/A 2.682±0.23 1.467±0.00 N/A
ENSMUST00000170397 8.778±0.25 N/A 0.049±0.00 N/A 0.634±0.02 0.219±0.00 N/A N/A 0.015±0.00 N/A 0.164±0.00 2.883±1.66 N/A 0.215±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834
CIL_00029J CIL_00029J_0002 CGP 9:58006411-58118823
CIL_00045Q CIL_00045Q_0002 CGP 9:58028677-58153996
CIL_00045T CIL_00045T_0002 CGP 9:58063788-58159221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001822 IEA kidney development
GO:0003184 IEA pulmonary valve morphogenesis
GO:0003281 IEA ventricular septum development
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007507 IEA heart development
GO:0007612 IEA learning
GO:0007631 IEA feeding behavior
GO:0016021 IEA integral component of membrane
GO:0030324 IEA lung development
GO:0030325 IEA adrenal gland development
GO:0030540 IEA female genitalia development
GO:0034633 IGI retinol transport
GO:0042297 IEA vocal learning
GO:0042573 IEA retinoic acid metabolic process
GO:0043234 IEA protein complex
GO:0043583 IEA ear development
GO:0043585 IEA nose morphogenesis
GO:0046427 IMP positive regulation of JAK-STAT cascade
GO:0048286 IEA lung alveolus development
GO:0048520 IEA positive regulation of behavior
GO:0048546 IEA digestive tract morphogenesis
GO:0048566 IEA embryonic digestive tract development
GO:0048589 IEA developmental growth
GO:0048745 IEA smooth muscle tissue development
GO:0048844 IEA artery morphogenesis
GO:0050890 IEA cognition
GO:0050905 IEA neuromuscular process
GO:0051183 IEA vitamin transporter activity
GO:0060322 IEA head development
GO:0060323 IEA head morphogenesis
GO:0060325 IEA face morphogenesis
GO:0060426 IEA lung vasculature development
GO:0060539 IEA diaphragm development
GO:0060900 IEA embryonic camera-type eye formation
GO:0061029 IEA eyelid development in camera-type eye
GO:0061038 IEA uterus morphogenesis
GO:0061143 IEA alveolar primary septum development
GO:0061156 IEA pulmonary artery morphogenesis
GO:0061205 IEA paramesonephric duct development
GO:0071939 IEA vitamin A import
GO:0097070 IEA ductus arteriosus closure

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051874 stra6 stimulated by retinoic acid gene 6 homolog (mouse) protein_coding Danio_rerio
ENSG00000137868 STRA6 stimulated by retinoic acid 6 protein_coding Homo_sapiens

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