C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: THUMP domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138050 THUMPD2 9606 - 2:39736060-39779267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000378727 THUMPD2-002 39736307-39779267 nonsense_mediated_decay
  ENST00000403537 THUMPD2-003 39768903-39779239 processed_transcript
  ENST00000460072 THUMPD2-004 39736060-39770013 retained_intron
  ENST00000505747 THUMPD2-001 39736305-39779267 protein_coding
  ENST00000510781 THUMPD2-006 39761332-39779152 nonsense_mediated_decay
  ENST00000527689 THUMPD2-008 39761365-39766212 retained_intron
  ENST00000530095 THUMPD2-009 39736683-39744654 retained_intron
  ENST00000530522 THUMPD2-005 39736610-39779221 nonsense_mediated_decay
  ENST00000531687 THUMPD2-007 39770017-39779240 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378727ENST00000403537ENST00000460072ENST00000505747ENST00000510781ENST00000530095ENST00000530522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378727 0.732±0.00 0.972±0.00 N/A 0.282±0.00 0.413±0.00 1.088±0.00 0.609±0.00 1.020±0.00 0.462±0.00 0.380±0.00 0.583±0.00 2.016±0.89 0.637±0.20 0.680±0.00
ENST00000403537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.467±0.00 N/A
ENST00000460072 N/A 0.363±0.00 0.316±0.00 0.722±0.31 0.191±0.00 0.260±0.00 0.117±0.00 0.366±0.00 0.248±0.00 0.438±0.00 N/A 0.842±0.24 N/A 0.420±0.00
ENST00000505747 N/A 0.724±0.00 N/A 0.961±0.02 0.868±0.00 0.761±0.00 0.576±0.28 1.489±0.00 0.620±0.19 0.690±0.00 N/A 1.694±0.21 N/A 1.905±0.00
ENST00000510781 N/A N/A 0.281±0.00 0.531±0.00 N/A N/A 0.158±0.00 0.593±0.00 N/A N/A N/A 2.345±0.00 0.688±0.00 0.752±0.00
ENST00000530095 N/A N/A N/A N/A N/A N/A N/A 1.360±0.00 N/A N/A 0.525±0.00 N/A N/A N/A
ENST00000530522 0.211±0.00 N/A 0.363±0.00 N/A N/A 0.352±0.00 N/A N/A N/A N/A 0.250±0.00 0.900±0.00 0.647±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066V CIL_00066V_0001 CGP 2:39664982-39779267
CIL_00066Z CIL_00066Z_0001 CGP 2:39736060-40611053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0008152 IEA metabolic process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000093070 thumpd2 THUMP domain containing 2 protein_coding Danio_rerio
ENSMUSG00000024246 Thumpd2 THUMP domain containing 2 protein_coding Mus_musculus

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