C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB1A, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138069 RAB1A 9606 - 2:65070701-65130106 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398529 RAB1A-004 65087871-65130101 protein_coding
  ENST00000409751 RAB1A-003 65087871-65130104 protein_coding
  ENST00000409784 RAB1A-001 65086855-65130106 protein_coding
  ENST00000409892 RAB1A-002 65086855-65130105 protein_coding
  ENST00000494188 RAB1A-005 65070701-65130086 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398529ENST00000409751ENST00000409784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398529 16.992±0.00 N/A N/A N/A N/A N/A 8.829±0.00 N/A 8.799±0.00 34.428±0.00 N/A 55.118±0.00 26.390±18.05 26.478±0.00
ENST00000409751 33.000±0.00 35.752±0.00 N/A 37.871±0.00 40.568±0.00 37.127±0.00 27.048±0.00 75.634±0.00 35.793±0.00 27.878±0.00 10.803±0.00 61.132±34.00 54.580±18.64 51.165±3.80
ENST00000409784 13.612±0.00 11.270±0.00 13.194±0.00 17.388±1.21 15.961±0.32 18.373±1.96 7.008±1.58 20.141±6.44 11.728±0.21 14.973±1.31 5.374±0.88 32.577±19.19 33.969±19.85 28.334±12.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000139 TAS Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0003924 IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006888 IMP ER to Golgi vesicle-mediated transport
GO:0006897 IMP endocytosis
GO:0006913 IEA nucleocytoplasmic transport
GO:0006914 IMP autophagy
GO:0007030 IMP Golgi organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0016477 IMP cell migration
GO:0019068 IGI virion assembly
GO:0030252 IMP growth hormone secretion
GO:0032402 IEA melanosome transport
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0042470 IEA melanosome
GO:0042742 IMP defense response to bacterium
GO:0047496 IMP vesicle transport along microtubule
GO:0070062 IDA extracellular vesicular exosome
GO:0072606 IMP interleukin-8 secretion
GO:0090110 IMP cargo loading into COPII-coated vesicle
GO:1903020 IGI positive regulation of glycoprotein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029663 rab1a RAB1A, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000020149 Rab1 RAB1, member RAS oncogene family protein_coding Mus_musculus

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