C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB1A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409784 RAB1A-001 ENSG00000138069 9606 - 2:65086855-65130106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409784 13.612±0.00 11.270±0.00 13.194±0.00 17.388±1.21 15.961±0.32 18.373±1.96 7.008±1.58 20.141±6.44 11.728±0.21 14.973±1.31 5.374±0.88 32.577±19.19 33.969±19.85 28.334±12.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000139 TAS Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006888 IMP ER to Golgi vesicle-mediated transport
GO:0006897 IMP endocytosis
GO:0006913 IEA nucleocytoplasmic transport
GO:0006914 IMP autophagy
GO:0007030 IMP Golgi organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0016477 IMP cell migration
GO:0019068 IGI virion assembly
GO:0030252 IMP growth hormone secretion
GO:0032402 IEA melanosome transport
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0042470 IEA melanosome
GO:0042742 IMP defense response to bacterium
GO:0047496 IMP vesicle transport along microtubule
GO:0070062 IDA extracellular vesicular exosome
GO:0072606 IMP interleukin-8 secretion
GO:0090110 IMP cargo loading into COPII-coated vesicle
GO:1903020 IGI positive regulation of glycoprotein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020358 Rab1-001 protein_coding Mus_musculus 0 2405
ENSMUST00000163483 Rab1-201 protein_coding Mus_musculus 0 2228
ENSMUST00000109602 Rab1-003 protein_coding Mus_musculus 0 1716
ENSMUST00000109601 Rab1-002 protein_coding Mus_musculus 0 1356
ENSMUST00000132285 Rab1-004 processed_transcript Mus_musculus 0 508
ENSMUST00000152728 Rab1-005 processed_transcript Mus_musculus 0 507

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