C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB1, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020149 Rab1 10090 + 11:20201432-20226856 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020358 Rab1-001 20201432-20226856 protein_coding
  ENSMUST00000109601 Rab1-002 20201439-20225464 protein_coding
  ENSMUST00000109602 Rab1-003 20201435-20226850 protein_coding
  ENSMUST00000132285 Rab1-004 20201439-20219487 processed_transcript
  ENSMUST00000152728 Rab1-005 20201609-20223572 processed_transcript
  ENSMUST00000163483 Rab1-201 20201602-20226856 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020358ENSMUST00000109601ENSMUST00000109602ENSMUST00000132285ENSMUST00000152728ENSMUST00000163483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020358 38.470±9.35 27.930±14.66 64.056±3.47 52.159±3.26 20.353±7.54 45.808±11.62 25.925±7.87 65.411±11.54 34.153±10.24 55.944±7.61 24.883±3.29 30.802±10.71 47.658±35.51 7.088±0.64
ENSMUST00000109601 N/A N/A 44.777±1.77 52.970±6.92 N/A N/A N/A N/A 33.420±12.73 N/A N/A 38.163±17.89 87.941±31.54 7.188±1.64
ENSMUST00000109602 N/A 18.734±5.29 N/A N/A 15.866±4.14 20.031±9.80 N/A 19.498±6.58 14.751±0.00 8.358±0.00 N/A 16.413±5.95 N/A N/A
ENSMUST00000132285 N/A 60.560±3.94 N/A N/A N/A 31.913±0.00 N/A N/A N/A N/A N/A 43.307±18.27 N/A N/A
ENSMUST00000152728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.489±0.00
ENSMUST00000163483 N/A N/A N/A 41.951±0.00 30.469±14.34 N/A 14.239±0.00 N/A 20.408±0.00 N/A 5.888±1.24 41.834±4.17 63.399±28.53 5.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ON CIL_0004ON_0002 CGP 11:20201432-20249429

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006184 ISS GTP catabolic process
GO:0006886 TAS intracellular protein transport
GO:0006888 ISA ER to Golgi vesicle-mediated transport
GO:0006897 ISS endocytosis
GO:0006914 ISS autophagy
GO:0007030 IEA Golgi organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016020 IEA membrane
GO:0016477 IMP cell migration
GO:0019068 IEA virion assembly
GO:0030252 ISS growth hormone secretion
GO:0032402 IMP melanosome transport
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0042470 IDA melanosome
GO:0042742 ISS defense response to bacterium
GO:0047496 ISS vesicle transport along microtubule
GO:0070062 IEA extracellular vesicular exosome
GO:0072606 ISS interleukin-8 secretion
GO:0090110 IEA cargo loading into COPII-coated vesicle
GO:1903020 IEA positive regulation of glycoprotein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029663 rab1a RAB1A, member RAS oncogene family protein_coding Danio_rerio
ENSG00000138069 RAB1A RAB1A, member RAS oncogene family protein_coding Homo_sapiens

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