C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transforming, acidic coiled-coil containing protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138162 TACC2 9606 + 10:121989174-122254545 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260733 TACC2-008 122163844-122254538 protein_coding
  ENST00000334433 TACC2-201 122021936-122254540 protein_coding
  ENST00000358010 TACC2-202 122021936-122254540 protein_coding
  ENST00000360561 TACC2-007 122163426-122254545 protein_coding
  ENST00000368997 TACC2-027 122210042-122254337 retained_intron
  ENST00000368999 TACC2-010 122163590-122254483 protein_coding
  ENST00000369000 TACC2-005 122126714-122254544 protein_coding
  ENST00000369001 TACC2-006 122113039-122254542 protein_coding
  ENST00000369004 TACC2-009 122163774-122254545 protein_coding
  ENST00000369005 TACC2-001 121989194-122254542 protein_coding
  ENST00000440764 TACC2-018 122210886-122227906 nonsense_mediated_decay
  ENST00000453444 TACC2-203 122021936-122254540 protein_coding
  ENST00000465600 TACC2-029 122246473-122254540 retained_intron
  ENST00000474014 TACC2-025 121994632-122023790 retained_intron
  ENST00000489754 TACC2-026 122019748-122022231 retained_intron
  ENST00000490979 TACC2-016 122237959-122254538 protein_coding
  ENST00000491540 TACC2-011 122021993-122083007 protein_coding
  ENST00000492237 TACC2-021 122113056-122210523 processed_transcript
  ENST00000492689 TACC2-024 121989174-122052697 retained_intron
  ENST00000493951 TACC2-020 122113030-122210569 processed_transcript
  ENST00000496913 TACC2-012 122211209-122237522 protein_coding
  ENST00000498721 TACC2-019 121989263-122079145 processed_transcript
  ENST00000503769 TACC2-028 122241634-122249128 retained_intron
  ENST00000505639 TACC2-017 122210903-122216665 protein_coding
  ENST00000508411 TACC2-014 122211686-122226421 protein_coding
  ENST00000513429 TACC2-002 121989194-122254545 protein_coding
  ENST00000514539 TACC2-015 122192448-122226480 protein_coding
  ENST00000515273 TACC2-003 121989206-122254345 protein_coding
  ENST00000515603 TACC2-004 121989206-122254348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260733ENST00000334433ENST00000358010ENST00000360561ENST00000368997ENST00000369000ENST00000369001ENST00000369004ENST00000465600ENST00000496913ENST00000515603
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260733 N/A N/A N/A 2.168±0.00 8.325±0.00 N/A 15.611±0.00 N/A 0.812±0.00 N/A 67.967±0.00 N/A N/A 4.479±0.00
ENST00000334433 N/A 0.835±0.00 N/A N/A 2.364±0.74 2.937±2.01 4.868±3.58 N/A 0.269±0.00 1.967±0.40 74.349±0.00 1.810±0.00 0.985±0.00 1.522±0.00
ENST00000358010 N/A N/A N/A N/A N/A 1.410±0.00 14.789±0.00 N/A N/A N/A 42.509±0.00 N/A N/A N/A
ENST00000360561 N/A N/A N/A 2.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.787±0.00
ENST00000368997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.513±0.00 1.536±0.00
ENST00000369000 N/A N/A N/A N/A N/A N/A N/A 1.300±0.00 N/A N/A N/A N/A N/A N/A
ENST00000369001 4.388±0.00 3.464±0.00 N/A 1.944±0.00 5.385±4.00 13.942±0.00 N/A 21.156±0.00 1.321±0.00 5.333±1.97 N/A 9.752±6.74 5.191±0.58 1.708±0.63
ENST00000369004 N/A N/A N/A 2.017±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465600 N/A N/A N/A N/A 1.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496913 N/A N/A N/A N/A N/A N/A N/A N/A 1.911±0.00 N/A N/A N/A N/A N/A
ENST00000515603 N/A 1.062±0.00 1.463±0.00 N/A N/A N/A N/A N/A 2.667±0.00 N/A N/A N/A 3.323±0.72 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095T CIL_00095T_0001 VISTA 10:121499915-122101503
CIL_00047F CIL_00047F_0002 CGP 10:121957088-122254545
CIL_0001BC CIL_0001BC_0001 CGP 10:121989174-122338162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0008283 IEA cell proliferation
GO:0019904 IEA protein domain specific binding
GO:0021987 IEA cerebral cortex development
GO:0022008 IEA neurogenesis
GO:0022027 IEA interkinetic nuclear migration
GO:0030953 IEA astral microtubule organization
GO:0032886 IEA regulation of microtubule-based process
GO:0035257 IDA nuclear hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062790 TACC2 transforming, acidic coiled-coil containing protein 2 protein_coding Danio_rerio
ENSMUSG00000030852 Tacc2 transforming, acidic coiled-coil containing protein 2 protein_coding Mus_musculus

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