C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00047F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000024311-ENSDARG00000062790 CGP 7955 13:29009416-29125894
GeneTranscriptPositionBiotype
ENSDARG00000024311 (nsmce4a)
non-SMC element 4 homolog A (S. cerevisiae) 		ENSDART00000039028 (nsmce4a-001) 29009416-29020239 protein_coding
ENSDARG00000062790 (TACC2)
transforming, acidic coiled-coil containing protein 2 		ENSDART00000101653 (TACC2-201) 29044014-29125894 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00047F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107672-ENSG00000138162 CGP 9606 10:121957088-122254545
GeneTranscriptPositionBiotype
ENSG00000138162 (TACC2)
transforming, acidic coiled-coil containing protein 2 		ENST00000260733 (TACC2-008) 122163844-122254538 protein_coding
ENST00000334433 (TACC2-201) 122021936-122254540 protein_coding
ENST00000358010 (TACC2-202) 122021936-122254540 protein_coding
ENST00000360561 (TACC2-007) 122163426-122254545 protein_coding
ENST00000368997 (TACC2-027) 122210042-122254337 retained_intron
ENST00000368999 (TACC2-010) 122163590-122254483 protein_coding
ENST00000369000 (TACC2-005) 122126714-122254544 protein_coding
ENST00000369001 (TACC2-006) 122113039-122254542 protein_coding
ENST00000369004 (TACC2-009) 122163774-122254545 protein_coding
ENST00000369005 (TACC2-001) 121989194-122254542 protein_coding
ENST00000440764 (TACC2-018) 122210886-122227906 nonsense_mediated_decay
ENST00000453444 (TACC2-203) 122021936-122254540 protein_coding
ENST00000465600 (TACC2-029) 122246473-122254540 retained_intron
ENST00000474014 (TACC2-025) 121994632-122023790 retained_intron
ENST00000489754 (TACC2-026) 122019748-122022231 retained_intron
ENST00000490979 (TACC2-016) 122237959-122254538 protein_coding
ENST00000491540 (TACC2-011) 122021993-122083007 protein_coding
ENST00000492237 (TACC2-021) 122113056-122210523 processed_transcript
ENST00000492689 (TACC2-024) 121989174-122052697 retained_intron
ENST00000493951 (TACC2-020) 122113030-122210569 processed_transcript
ENST00000496913 (TACC2-012) 122211209-122237522 protein_coding
ENST00000498721 (TACC2-019) 121989263-122079145 processed_transcript
ENST00000503769 (TACC2-028) 122241634-122249128 retained_intron
ENST00000505639 (TACC2-017) 122210903-122216665 protein_coding
ENST00000508411 (TACC2-014) 122211686-122226421 protein_coding
ENST00000513429 (TACC2-002) 121989194-122254545 protein_coding
ENST00000514539 (TACC2-015) 122192448-122226480 protein_coding
ENST00000515273 (TACC2-003) 121989206-122254345 protein_coding
ENST00000515603 (TACC2-004) 121989206-122254348 protein_coding
ENSG00000273891 (RP11-500G22.5)
 ENST00000620490 (RP11-500G22.5-001) 121965764-121967700 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00047F_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040331-ENSMUSG00000030852 CGP 10090 7:130532523-130764784
GeneTranscriptPositionBiotype
ENSMUSG00000030852 (Tacc2)
transforming, acidic coiled-coil containing protein 2 		ENSMUST00000033141 (Tacc2-201) 130692556-130764784 protein_coding
ENSMUST00000059145 (Tacc2-202) 130577484-130764784 protein_coding
ENSMUST00000084513 (Tacc2-203) 130577484-130764782 protein_coding
ENSMUSG00000040331 (Nsmce4a)
non-SMC element 4 homolog A (S. cerevisiae) 		ENSMUST00000159694 (Nsmce4a-006) 130533770-130573118 protein_coding
ENSMUST00000160289 (Nsmce4a-001) 130532523-130547381 protein_coding
ENSMUST00000161076 (Nsmce4a-003) 130536983-130545954 nonsense_mediated_decay
ENSMUST00000161414 (Nsmce4a-002) 130539708-130542791 retained_intron
ENSMUST00000161470 (Nsmce4a-004) 130535549-130539507 retained_intron
ENSMUST00000162510 (Nsmce4a-005) 130532533-130535973 retained_intron

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047F_0001ENSDARG00000024311ENSDART00000039028ENSDARG00000062790ENSDART00000101653CIL_00047F_0002ENSG00000138162ENST00000260733ENST00000334433ENST00000358010ENST00000360561ENST00000368997ENST00000368999ENST00000369000ENST00000369001ENST00000369004ENST00000369005ENST00000440764ENST00000453444ENST00000465600ENST00000474014ENST00000489754ENST00000490979ENST00000491540ENST00000492237ENST00000492689ENST00000493951ENST00000496913ENST00000498721ENST00000503769ENST00000505639ENST00000508411ENST00000513429ENST00000514539ENST00000515273ENST00000515603ENSG00000273891ENST00000620490CIL_00047F_0003ENSMUSG00000030852ENSMUST00000033141ENSMUST00000059145ENSMUST00000084513ENSMUSG00000040331ENSMUST00000159694ENSMUST00000160289ENSMUST00000161076ENSMUST00000161414ENSMUST00000161470ENSMUST00000162510
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047F_0001ENSDARG00000024311ENSDART00000039028ENSDARG00000062790ENSDART00000101653CIL_00047F_0002ENSG00000138162ENST00000260733ENST00000334433ENST00000358010ENST00000360561ENST00000368997ENST00000369000ENST00000369001ENST00000369004ENST00000465600ENST00000496913ENST00000515603ENSG00000273891ENST00000620490CIL_00047F_0003ENSMUSG00000030852ENSMUST00000033141ENSMUST00000059145ENSMUST00000084513ENSMUSG00000040331ENSMUST00000159694ENSMUST00000160289ENSMUST00000161076
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024311 ENSDART00000039028 N/A N/A N/A 2.475±0.49 N/A N/A 2.660±0.83 6.854±6.90 0.498±0.00 N/A 0.983±0.00 N/A N/A N/A
ENSDARG00000062790 ENSDART00000101653 N/A N/A N/A 31.901±13.24 N/A N/A 2.859±2.60 0.859±0.45 0.198±0.00 N/A 27.115±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138162 ENST00000260733 N/A N/A N/A 2.168±0.00 8.325±0.00 N/A 15.611±0.00 N/A 0.812±0.00 N/A 67.967±0.00 N/A N/A 4.479±0.00
ENST00000334433 N/A 0.835±0.00 N/A N/A 2.364±0.74 2.937±2.01 4.868±3.58 N/A 0.269±0.00 1.967±0.40 74.349±0.00 1.810±0.00 0.985±0.00 1.522±0.00
ENST00000358010 N/A N/A N/A N/A N/A 1.410±0.00 14.789±0.00 N/A N/A N/A 42.509±0.00 N/A N/A N/A
ENST00000360561 N/A N/A N/A 2.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.787±0.00
ENST00000368997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.513±0.00 1.536±0.00
ENST00000368999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369000 N/A N/A N/A N/A N/A N/A N/A 1.300±0.00 N/A N/A N/A N/A N/A N/A
ENST00000369001 4.388±0.00 3.464±0.00 N/A 1.944±0.00 5.385±4.00 13.942±0.00 N/A 21.156±0.00 1.321±0.00 5.333±1.97 N/A 9.752±6.74 5.191±0.58 1.708±0.63
ENST00000369004 N/A N/A N/A 2.017±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465600 N/A N/A N/A N/A 1.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496913 N/A N/A N/A N/A N/A N/A N/A N/A 1.911±0.00 N/A N/A N/A N/A N/A
ENST00000498721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515603 N/A 1.062±0.00 1.463±0.00 N/A N/A N/A N/A N/A 2.667±0.00 N/A N/A N/A 3.323±0.72 N/A
ENSG00000273891 ENST00000620490 N/A N/A N/A 0.636±0.00 0.713±0.00 N/A 0.185±0.00 N/A N/A N/A 0.248±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030852 ENSMUST00000033141 2.321±1.09 0.732±0.00 N/A 16.373±6.69 2.404±0.00 N/A N/A N/A 0.241±0.09 N/A N/A 3.763±1.47 N/A 0.573±0.00
ENSMUST00000059145 2.198±0.62 1.944±0.00 6.823±1.10 N/A 2.358±1.60 3.118±0.74 13.105±0.00 5.126±2.19 1.193±0.41 3.526±1.01 26.762±5.59 15.131±0.00 5.878±3.55 N/A
ENSMUST00000084513 N/A N/A 2.665±0.14 N/A 0.984±0.25 0.983±0.14 5.576±1.69 1.138±0.10 0.291±0.09 1.232±0.34 20.039±11.42 1.973±0.33 3.336±1.53 N/A
ENSMUSG00000040331 ENSMUST00000159694 N/A N/A N/A N/A 6.534±0.00 N/A N/A N/A N/A N/A N/A 15.983±0.00 N/A N/A
ENSMUST00000160289 21.569±7.56 35.919±18.42 26.634±1.12 19.159±6.78 19.204±9.44 48.396±6.72 12.025±0.80 26.312±3.53 26.537±16.56 22.366±2.75 15.421±1.42 63.221±19.86 37.131±6.30 7.080±1.90
ENSMUST00000161076 N/A N/A N/A 16.174±0.00 N/A N/A N/A N/A N/A N/A N/A 39.872±0.00 43.166±5.10 N/A
ENSMUST00000161414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading