C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: debranching RNA lariats 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138231 DBR1 9606 - 3:138161012-138174949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260803 DBR1-001 138161012-138174949 protein_coding
  ENST00000460271 DBR1-003 138163349-138164203 retained_intron
  ENST00000463982 DBR1-002 138171320-138174866 processed_transcript
  ENST00000477557 DBR1-004 138163349-138174859 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260803ENST00000463982ENST00000477557
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260803 1.065±0.00 2.961±0.00 2.146±0.61 3.016±0.21 1.529±0.09 1.395±0.29 1.606±0.23 1.915±0.77 1.539±0.63 0.730±0.35 3.562±1.14 3.688±2.26 2.492±0.32
ENST00000463982 N/A N/A 1.862±0.00 N/A N/A N/A N/A 2.857±0.00 N/A N/A N/A N/A N/A
ENST00000477557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.162±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0001 VISTA 3:137620069-138221266
CIL_00036L CIL_00036L_0002 CGP 3:138161012-138298389

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 IMP RNA splicing, via transesterification reactions
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008152 IEA metabolic process
GO:0008419 IMP RNA lariat debranching enzyme activity
GO:0016787 IEA hydrolase activity
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IMP RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056923 dbr1 debranching enzyme homolog 1 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000032469 Dbr1 debranching enzyme homolog 1 (S. cerevisiae) protein_coding Mus_musculus

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