C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: debranching enzyme homolog 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032469 Dbr1 10090 + 9:99575799-99584501 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066650 Dbr1-001 99575799-99584501 protein_coding
  ENSMUST00000136884 Dbr1-006 99580297-99582689 protein_coding
  ENSMUST00000138002 Dbr1-004 99576108-99582058 protein_coding
  ENSMUST00000139796 Dbr1-005 99580202-99583838 nonsense_mediated_decay
  ENSMUST00000148987 Dbr1-002 99575828-99582441 protein_coding
  ENSMUST00000156035 Dbr1-003 99576080-99582049 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066650ENSMUST00000139796ENSMUST00000148987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066650 2.109±0.49 3.379±0.73 5.745±0.61 6.447±1.09 2.700±1.03 3.176±1.00 1.222±0.20 2.770±1.38 5.523±2.96 2.002±0.73 1.543±0.26 4.642±2.21 6.386±2.16 0.990±0.36
ENSMUST00000139796 1.483±0.00 N/A N/A 4.228±0.00 5.264±0.00 N/A N/A N/A N/A N/A 0.923±0.31 5.198±1.49 N/A 0.996±0.00
ENSMUST00000148987 N/A 13.483±6.50 N/A N/A N/A 2.645±0.00 N/A N/A 2.125±0.16 N/A N/A 6.812±2.10 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 ISS RNA splicing, via transesterification reactions
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0005634 ISS nucleus
GO:0008419 ISS RNA lariat debranching enzyme activity
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056923 dbr1 debranching enzyme homolog 1 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000138231 DBR1 debranching RNA lariats 1 protein_coding Homo_sapiens

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