C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: debranching RNA lariats 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260803 DBR1-001 ENSG00000138231 9606 - 3:138161012-138174949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260803
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260803 1.065±0.00 2.961±0.00 2.146±0.61 3.016±0.21 1.529±0.09 1.395±0.29 1.606±0.23 1.915±0.77 1.539±0.63 0.730±0.35 3.562±1.14 3.688±2.26 2.492±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0001 VISTA 3:137620069-138221266
CIL_00036L CIL_00036L_0002 CGP 3:138161012-138298389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 IMP RNA splicing, via transesterification reactions
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008419 IMP RNA lariat debranching enzyme activity
GO:0016787 IEA hydrolase activity
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IMP RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066650 Dbr1-001 protein_coding Mus_musculus 0 1515
ENSMUST00000148987 Dbr1-002 protein_coding Mus_musculus 0 654
ENSMUST00000156035 Dbr1-003 protein_coding Mus_musculus 0 470
ENSMUST00000138002 Dbr1-004 protein_coding Mus_musculus 0 361
ENSMUST00000136884 Dbr1-006 protein_coding Mus_musculus 0 270

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