C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium responsive transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138380 CARF 9606 + 2:202912214-202987063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320443 CARF-201 202912218-202986485 protein_coding
  ENST00000402905 CARF-001 202912214-202987063 protein_coding
  ENST00000414439 CARF-004 202912283-202983642 protein_coding
  ENST00000414490 CARF-014 202912245-202942824 protein_coding
  ENST00000414857 CARF-010 202912273-202952647 protein_coding
  ENST00000422368 CARF-003 202912277-202974354 nonsense_mediated_decay
  ENST00000427712 CARF-012 202912292-202955699 nonsense_mediated_decay
  ENST00000428585 CARF-005 202912283-202983935 protein_coding
  ENST00000430899 CARF-015 202912279-202941966 protein_coding
  ENST00000431787 CARF-009 202912247-202952620 protein_coding
  ENST00000432024 CARF-017 202912279-202942881 protein_coding
  ENST00000434998 CARF-007 202912289-202962533 protein_coding
  ENST00000438828 CARF-002 202912601-202984189 protein_coding
  ENST00000441569 CARF-018 202912279-202942879 protein_coding
  ENST00000443740 CARF-019 202912283-202942947 protein_coding
  ENST00000444724 CARF-008 202912255-202963168 protein_coding
  ENST00000445120 CARF-016 202912279-202942867 protein_coding
  ENST00000447539 CARF-011 202912284-202954045 protein_coding
  ENST00000457031 CARF-006 202912286-202971605 nonsense_mediated_decay
  ENST00000471271 CARF-013 202912283-202967012 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000320443ENST00000402905ENST00000414439ENST00000422368ENST00000427712ENST00000428585ENST00000438828
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000320443 N/A N/A N/A 1.094±0.00 0.898±0.00 N/A N/A 0.715±0.00 N/A 0.174±0.00 N/A 2.309±0.00
ENST00000402905 1.088±0.00 N/A 1.386±0.00 N/A 0.363±0.00 0.452±0.00 0.943±0.00 0.319±0.00 N/A N/A 0.977±0.15 N/A
ENST00000414439 N/A 1.245±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422368 N/A 2.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427712 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.562±0.00 N/A N/A
ENST00000428585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.164±0.59
ENST00000438828 N/A 0.783±0.00 N/A N/A 1.068±0.00 0.581±0.00 N/A 1.028±0.00 0.934±0.00 N/A 2.664±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0001 CGP 2:202773150-203014798
CIL_00020W CIL_00020W_0001 CGP 2:202874782-203014798
CIL_00020V CIL_00020V_0001 CGP 2:202912214-203226378

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035865 IDA cellular response to potassium ion
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0061400 IDA positive regulation of transcription from RNA polymerase II promoter in response to calcium ion
GO:0071277 IDA cellular response to calcium ion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019950 carf calcium responsive transcription factor protein_coding Danio_rerio
ENSMUSG00000026017 Carf calcium response factor protein_coding Mus_musculus

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