C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138380-ENSG00000144426 CGP 9606 2:202912214-203226378
GeneTranscriptPositionBiotype
ENSG00000138380 (CARF)
calcium responsive transcription factor 		ENST00000320443 (CARF-201) 202912218-202986485 protein_coding
ENST00000402905 (CARF-001) 202912214-202987063 protein_coding
ENST00000414439 (CARF-004) 202912283-202983642 protein_coding
ENST00000414490 (CARF-014) 202912245-202942824 protein_coding
ENST00000414857 (CARF-010) 202912273-202952647 protein_coding
ENST00000422368 (CARF-003) 202912277-202974354 nonsense_mediated_decay
ENST00000427712 (CARF-012) 202912292-202955699 nonsense_mediated_decay
ENST00000428585 (CARF-005) 202912283-202983935 protein_coding
ENST00000430899 (CARF-015) 202912279-202941966 protein_coding
ENST00000431787 (CARF-009) 202912247-202952620 protein_coding
ENST00000432024 (CARF-017) 202912279-202942881 protein_coding
ENST00000434998 (CARF-007) 202912289-202962533 protein_coding
ENST00000438828 (CARF-002) 202912601-202984189 protein_coding
ENST00000441569 (CARF-018) 202912279-202942879 protein_coding
ENST00000443740 (CARF-019) 202912283-202942947 protein_coding
ENST00000444724 (CARF-008) 202912255-202963168 protein_coding
ENST00000445120 (CARF-016) 202912279-202942867 protein_coding
ENST00000447539 (CARF-011) 202912284-202954045 protein_coding
ENST00000457031 (CARF-006) 202912286-202971605 nonsense_mediated_decay
ENST00000471271 (CARF-013) 202912283-202967012 processed_transcript
ENSG00000138442 (WDR12)
WD repeat domain 12 		ENST00000261015 (WDR12-001) 202874782-202912226 protein_coding
ENST00000463824 (WDR12-004) 202883589-202884535 retained_intron
ENST00000464820 (WDR12-006) 202883473-202884240 retained_intron
ENST00000467777 (WDR12-005) 202880601-202882855 retained_intron
ENST00000475611 (WDR12-007) 202884238-202894765 retained_intron
ENST00000477723 (WDR12-009) 202899557-203014798 processed_transcript
ENST00000477727 (WDR12-008) 202884141-202892674 retained_intron
ENST00000478869 (WDR12-003) 202895998-202901120 retained_intron
ENSG00000144426 (NBEAL1)
neurobeachin-like 1 		ENST00000414576 (NBEAL1-009) 203167310-203217464 protein_coding
ENST00000434469 (NBEAL1-004) 203208635-203226378 protein_coding
ENST00000449802 (NBEAL1-001) 203014879-203219874 protein_coding
ENST00000460355 (NBEAL1-003) 203180956-203191335 retained_intron
ENST00000460416 (NBEAL1-012) 203016365-203050168 retained_intron
ENST00000463830 (NBEAL1-008) 203083499-203085008 retained_intron
ENST00000478884 (NBEAL1-007) 203014925-203062488 processed_transcript
ENST00000483147 (NBEAL1-013) 203083237-203097599 processed_transcript
ENST00000492870 (NBEAL1-006) 203015791-203041857 processed_transcript
ENST00000497505 (NBEAL1-005) 203014879-203086212 retained_intron
ENSG00000202059 (SNORA1)
Small nucleolar RNA SNORA1 		ENST00000365189 (SNORA1.1-203) 203052285-203052418 snoRNA
ENSG00000225124 (AC023271.2)
 ENST00000413895 (AC023271.2-001) 203074685-203075142 processed_pseudogene
ENSG00000232994 (RPL7P14)
ribosomal protein L7 pseudogene 14 		ENST00000449851 (RPL7P14-001) 203040108-203040899 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00020V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026017-ENSMUSG00000073664 CGP 10090 1:60098247-60338328
GeneTranscriptPositionBiotype
ENSMUSG00000026017 (Carf)
calcium response factor 		ENSMUST00000027171 (Carf-007) 60108102-60150800 protein_coding
ENSMUST00000124986 (Carf-003) 60098264-60125977 protein_coding
ENSMUST00000130075 (Carf-002) 60098247-60151032 nonsense_mediated_decay
ENSMUST00000132949 (Carf-005) 60141448-60148027 nonsense_mediated_decay
ENSMUST00000150008 (Carf-004) 60098264-60109061 retained_intron
ENSMUST00000180952 (Carf-201) 60108081-60150729 protein_coding
ENSMUST00000186107 (Carf-008) 60108102-60150800 nonsense_mediated_decay
ENSMUST00000186779 (Carf-009) 60139796-60142211 retained_intron
ENSMUST00000187978 (Carf-001) 60105344-60153953 protein_coding
ENSMUST00000191232 (Carf-006) 60101246-60104480 retained_intron
ENSMUSG00000026019 (Wdr12)
WD repeat domain 12 		ENSMUST00000027173 (Wdr12-001) 60069785-60097908 protein_coding
ENSMUST00000117438 (Wdr12-002) 60076868-60098645 protein_coding
ENSMUST00000122038 (Wdr12-003) 60076868-60098146 protein_coding
ENSMUST00000133767 (Wdr12-006) 60093998-60097697 retained_intron
ENSMUST00000136461 (Wdr12-008) 60083795-60085939 processed_transcript
ENSMUST00000141417 (Wdr12-005) 60088041-60098135 protein_coding
ENSMUST00000143342 (Wdr12-004) 60088041-60098125 protein_coding
ENSMUST00000147413 (Wdr12-007) 60083085-60085762 retained_intron
ENSMUSG00000073664 (Nbeal1)
neurobeachin like 1 		ENSMUST00000035569 (Nbeal1-010) 60260306-60319694 protein_coding
ENSMUST00000159344 (Nbeal1-004) 60278770-60291929 protein_coding
ENSMUST00000160834 (Nbeal1-001) 60180599-60338328 protein_coding
ENSMUST00000160980 (Nbeal1-003) 60222202-60235561 protein_coding
ENSMUST00000162291 (Nbeal1-002) 60260314-60331466 nonsense_mediated_decay
ENSMUST00000185573 (Nbeal1-007) 60227222-60229898 retained_intron
ENSMUST00000185984 (Nbeal1-008) 60266139-60269356 retained_intron
ENSMUST00000187195 (Nbeal1-006) 60180812-60185898 retained_intron
ENSMUST00000188450 (Nbeal1-005) 60235464-60282038 retained_intron
ENSMUST00000190958 (Nbeal1-009) 60283935-60286196 retained_intron
ENSMUSG00000082609 (Gm15464)
predicted gene 15464 		ENSMUST00000118718 (Gm15464-001) 60117255-60117685 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020V_0001ENSG00000138380ENST00000320443ENST00000402905ENST00000414439ENST00000422368ENST00000427712ENST00000428585ENST00000438828ENSG00000138442ENST00000261015ENST00000467777ENST00000478869ENSG00000144426ENST00000414576ENST00000449802ENST00000460355ENST00000497505ENSG00000202059ENST00000365189ENSG00000225124ENST00000413895ENSG00000232994ENST00000449851CIL_00020V_0002ENSMUSG00000026017ENSMUST00000027171ENSMUST00000130075ENSMUST00000180952ENSMUST00000187978ENSMUSG00000026019ENSMUST00000027173ENSMUST00000117438ENSMUST00000122038ENSMUST00000141417ENSMUST00000143342ENSMUSG00000073664ENSMUST00000035569ENSMUST00000160834ENSMUST00000187195ENSMUSG00000082609ENSMUST00000118718
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138380 ENST00000320443 N/A N/A N/A N/A 1.094±0.00 0.898±0.00 N/A N/A 0.715±0.00 N/A 0.174±0.00 N/A N/A 2.309±0.00
ENST00000402905 N/A 1.088±0.00 N/A 1.386±0.00 N/A 0.363±0.00 0.452±0.00 0.943±0.00 0.319±0.00 N/A N/A 0.977±0.15 N/A N/A
ENST00000414439 N/A N/A 1.245±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422368 N/A N/A 2.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.562±0.00 N/A N/A N/A
ENST00000428585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.164±0.59
ENST00000430899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438828 N/A N/A 0.783±0.00 N/A N/A 1.068±0.00 0.581±0.00 N/A 1.028±0.00 0.934±0.00 N/A 2.664±0.00 N/A N/A
ENST00000441569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138442 ENST00000261015 1.710±0.00 1.036±0.00 0.403±0.00 1.367±0.25 1.352±0.79 0.690±0.12 0.505±0.00 1.253±0.00 0.772±0.08 0.669±0.06 1.306±0.00 1.931±0.90 1.102±0.51 1.679±0.00
ENST00000463824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467777 N/A N/A N/A N/A N/A 3.613±0.00 N/A 8.165±0.00 N/A N/A N/A 18.453±11.20 5.601±0.00 N/A
ENST00000475611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.096±0.00 25.907±18.45 18.853±0.00 26.069±0.00
ENSG00000144426 ENST00000414576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 0.699±0.00 0.369±0.19 1.515±0.00
ENST00000434469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449802 0.950±0.00 0.283±0.00 2.477±0.00 0.350±0.09 2.241±1.28 0.602±0.00 1.177±0.33 1.223±0.12 1.811±1.51 4.242±3.05 0.183±0.00 2.289±2.50 0.249±0.11 0.770±0.03
ENST00000460355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.095±0.00 N/A N/A N/A
ENST00000460416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.701±0.00 N/A N/A
ENSG00000202059 ENST00000365189 0.124±0.00 0.123±0.00 N/A N/A N/A N/A N/A N/A N/A 0.330±0.00 N/A N/A N/A N/A
ENSG00000225124 ENST00000413895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A
ENSG00000232994 ENST00000449851 0.072±0.00 0.057±0.00 0.201±0.00 0.069±0.03 0.781±0.61 0.473±0.44 0.033±0.00 0.019±0.00 0.039±0.02 0.457±0.00 N/A 0.521±0.31 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026017 ENSMUST00000027171 1.659±0.00 N/A N/A N/A N/A 0.855±0.00 0.504±0.00 0.703±0.00 N/A 1.110±0.00 N/A 0.915±0.00 N/A N/A
ENSMUST00000124986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.565±0.00 N/A N/A
ENSMUST00000132949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180952 2.420±0.00 N/A N/A N/A 1.650±0.55 N/A N/A N/A N/A N/A N/A 1.435±0.08 N/A 7.762±0.88
ENSMUST00000186107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187978 1.080±0.24 1.286±0.24 0.822±0.00 1.774±0.63 1.044±0.17 0.598±0.14 0.412±0.03 0.639±0.12 0.804±0.24 0.939±0.19 0.635±0.07 1.286±0.43 1.021±0.17 N/A
ENSMUST00000191232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026019 ENSMUST00000027173 0.703±0.04 N/A 0.607±0.17 1.318±0.51 0.362±0.05 0.277±0.00 0.228±0.06 0.304±0.02 0.994±0.51 0.300±0.05 0.345±0.08 0.614±0.03 0.562±0.05 N/A
ENSMUST00000117438 2.165±0.43 N/A 1.146±0.00 1.850±0.00 1.346±0.42 0.545±0.05 1.823±0.23 1.359±0.30 1.738±0.92 1.198±0.43 3.093±0.41 1.568±0.41 1.869±0.59 20.127±2.04
ENSMUST00000122038 1.760±0.06 N/A 3.378±1.06 4.181±0.94 2.578±0.00 0.588±0.00 1.455±0.00 0.887±0.10 3.433±3.51 0.852±0.09 1.150±0.03 2.972±0.94 4.322±2.80 11.336±5.77
ENSMUST00000133767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141417 N/A N/A N/A 19.121±0.00 N/A N/A N/A 2.791±0.00 2.607±0.00 N/A N/A 21.588±0.00 27.731±19.76 73.122±0.00
ENSMUST00000143342 5.254±0.17 N/A N/A N/A N/A N/A N/A 3.282±0.48 3.225±0.67 N/A N/A 3.737±0.00 N/A 39.188±8.33
ENSMUST00000147413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000073664 ENSMUST00000035569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.922±0.00 N/A N/A
ENSMUST00000159344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160834 1.432±0.58 1.166±0.60 3.186±2.18 0.600±0.22 1.157±0.48 0.573±0.20 1.854±0.63 0.855±0.20 0.233±0.06 3.348±1.20 0.580±0.46 1.391±0.57 0.606±0.31 0.624±0.37
ENSMUST00000160980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.095±0.00 N/A N/A
ENSMUST00000188450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082609 ENSMUST00000118718 0.169±0.00 N/A 1.341±0.18 0.336±0.01 0.298±0.00 N/A N/A 0.126±0.00 0.497±0.58 0.156±0.00 N/A 0.627±0.37 0.293±0.18 0.164±0.05

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