C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium responsive transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402905 CARF-001 ENSG00000138380 9606 + 2:202912214-202987063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverOvaryENST00000402905
Transcript ID Adrenal Brain Colon Heart Kidney Liver Ovary
ENST00000402905 1.088±0.00 1.386±0.00 0.363±0.00 0.452±0.00 0.943±0.00 0.319±0.00 0.977±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0001 CGP 2:202773150-203014798
CIL_00020W CIL_00020W_0001 CGP 2:202874782-203014798
CIL_00020V CIL_00020V_0001 CGP 2:202912214-203226378

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035865 IDA cellular response to potassium ion
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0061400 IDA positive regulation of transcription from RNA polymerase II promoter in response to calcium ion
GO:0071277 IDA cellular response to calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187978 Carf-001 protein_coding Mus_musculus 0 1648
ENSMUST00000130075 Carf-002 nonsense_mediated_decay Mus_musculus 0 1648
ENSMUST00000027171 Carf-007 protein_coding Mus_musculus 0 1592
ENSMUST00000180952 Carf-201 protein_coding Mus_musculus 0 1581
ENSMUST00000186107 Carf-008 nonsense_mediated_decay Mus_musculus 0 915
ENSMUST00000186779 Carf-009 retained_intron Mus_musculus 0 265

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