C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138642 HERC6 9606 + 4:88378739-88443111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264346 HERC6-001 88378863-88443111 protein_coding
  ENST00000273960 HERC6-201 88378739-88443096 protein_coding
  ENST00000380265 HERC6-003 88378739-88443097 protein_coding
  ENST00000502870 HERC6-006 88379064-88390878 protein_coding
  ENST00000504905 HERC6-002 88378911-88390732 nonsense_mediated_decay
  ENST00000506714 HERC6-004 88378991-88399769 retained_intron
  ENST00000506842 HERC6-009 88439845-88440640 retained_intron
  ENST00000515365 HERC6-005 88390820-88405025 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264346ENST00000273960ENST00000380265ENST00000502870ENST00000515365
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264346 0.566±0.00 0.652±0.00 2.725±0.04 0.686±0.00 0.193±0.06 1.846±0.84 1.849±0.00 0.932±0.00 1.182±0.67 N/A 3.044±1.48 2.888±0.91 1.256±0.10
ENST00000273960 N/A N/A 0.621±0.00 1.276±0.00 N/A N/A 0.572±0.00 0.339±0.00 N/A N/A N/A N/A 0.604±0.00
ENST00000380265 0.773±0.00 2.206±0.00 2.049±0.00 1.286±0.00 N/A N/A 0.465±0.00 0.337±0.00 0.544±0.00 0.307±0.00 N/A 0.440±0.00 1.457±0.00
ENST00000502870 N/A N/A N/A N/A N/A N/A 0.743±0.00 N/A N/A N/A N/A N/A N/A
ENST00000515365 N/A N/A N/A N/A 1.153±0.00 N/A N/A N/A N/A 0.499±0.12 1.989±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KK CIL_0000KK_0001 CGP 4:88257620-88443111

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0004842 IBA:IEA ubiquitin-protein transferase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029798 Herc6 hect domain and RLD 6 protein_coding Mus_musculus

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