C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scavenger receptor class B, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138760 SCARB2 9606 - 4:76158737-76213893 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264896 SCARB2-001 76158737-76213893 protein_coding
  ENST00000452464 SCARB2-002 76161286-76213603 protein_coding
  ENST00000502908 SCARB2-004 76180735-76195845 retained_intron
  ENST00000509994 SCARB2-003 76181014-76213600 nonsense_mediated_decay
  ENST00000511129 SCARB2-005 76163209-76166864 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264896ENST00000452464
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264896 36.775±0.00 21.098±0.00 14.942±0.00 43.827±5.59 39.206±7.46 34.420±7.75 12.844±5.20 28.397±4.98 31.994±4.83 39.667±5.18 26.805±15.25 31.006±8.30 40.457±3.69 22.355±10.13
ENST00000452464 N/A N/A N/A N/A N/A N/A 11.755±0.00 N/A N/A N/A 38.206±0.00 12.263±0.00 19.110±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071G CIL_00071G_0001 CGP 4:76114659-76213893
CIL_00071J CIL_00071J_0001 CGP 4:76158737-76283780

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005764 IEA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005925 IDA focal adhesion
GO:0006622 IMP protein targeting to lysosome
GO:0007155 IEA cell adhesion
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0043202 ISS lysosomal lumen
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089844 SCARB2 scavenger receptor class B, member 2 protein_coding Danio_rerio
ENSMUSG00000029426 Scarb2 scavenger receptor class B, member 2 protein_coding Mus_musculus

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