C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00071G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138750-ENSG00000138760 CGP 9606 4:76114659-76213893
GeneTranscriptPositionBiotype
ENSG00000138750 (NUP54)
nucleoporin 54kDa 		ENST00000264883 (NUP54-001) 76114664-76148515 protein_coding
ENST00000502850 (NUP54-003) 76115087-76148405 nonsense_mediated_decay
ENST00000504173 (NUP54-016) 76124580-76148444 retained_intron
ENST00000506098 (NUP54-013) 76136321-76147821 processed_transcript
ENST00000507257 (NUP54-002) 76114659-76148416 nonsense_mediated_decay
ENST00000508465 (NUP54-017) 76115104-76130701 processed_transcript
ENST00000508583 (NUP54-007) 76144130-76148434 processed_transcript
ENST00000508604 (NUP54-006) 76114659-76130851 retained_intron
ENST00000510569 (NUP54-014) 76144149-76145820 processed_transcript
ENST00000510884 (NUP54-012) 76144184-76148200 processed_transcript
ENST00000512151 (NUP54-005) 76115301-76148397 nonsense_mediated_decay
ENST00000513248 (NUP54-018) 76115438-76118437 retained_intron
ENST00000513352 (NUP54-010) 76144197-76148397 nonsense_mediated_decay
ENST00000514307 (NUP54-011) 76136188-76148202 processed_transcript
ENST00000514313 (NUP54-015) 76132320-76134311 retained_intron
ENST00000514901 (NUP54-009) 76144130-76148398 protein_coding
ENST00000514987 (NUP54-004) 76115206-76148397 protein_coding
ENST00000515460 (NUP54-008) 76134176-76148377 processed_transcript
ENSG00000138760 (SCARB2)
scavenger receptor class B, member 2 		ENST00000264896 (SCARB2-001) 76158737-76213893 protein_coding
ENST00000452464 (SCARB2-002) 76161286-76213603 protein_coding
ENST00000502908 (SCARB2-004) 76180735-76195845 retained_intron
ENST00000509994 (SCARB2-003) 76181014-76213600 nonsense_mediated_decay
ENST00000511129 (SCARB2-005) 76163209-76166864 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_00071G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034826-ENSMUSG00000029426 CGP 10090 5:92415540-92505608
GeneTranscriptPositionBiotype
ENSMUSG00000029426 (Scarb2)
scavenger receptor class B, member 2 		ENSMUST00000031377 (Scarb2-201) 92443873-92505608 protein_coding
ENSMUSG00000034826 (Nup54)
nucleoporin 54 		ENSMUST00000038514 (Nup54-001) 92415540-92435219 protein_coding
ENSMUST00000122893 (Nup54-002) 92428021-92435091 retained_intron
ENSMUST00000123694 (Nup54-007) 92416209-92417972 retained_intron
ENSMUST00000130156 (Nup54-005) 92430908-92434757 protein_coding
ENSMUST00000135112 (Nup54-003) 92430900-92435123 protein_coding
ENSMUST00000142525 (Nup54-006) 92425750-92434546 processed_transcript
ENSMUST00000146470 (Nup54-004) 92428292-92435114 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071G_0001ENSG00000138750ENST00000264883ENST00000502850ENST00000504173ENST00000506098ENST00000507257ENST00000508465ENST00000508583ENST00000508604ENST00000510569ENST00000510884ENST00000512151ENST00000513248ENST00000513352ENST00000514307ENST00000514313ENST00000514901ENST00000514987ENST00000515460ENSG00000138760ENST00000264896ENST00000452464ENST00000502908ENST00000509994ENST00000511129CIL_00071G_0002ENSMUSG00000029426ENSMUST00000031377ENSMUSG00000034826ENSMUST00000038514ENSMUST00000122893ENSMUST00000123694ENSMUST00000130156ENSMUST00000135112ENSMUST00000142525ENSMUST00000146470
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071G_0001ENSG00000138750ENST00000264883ENST00000502850ENST00000507257ENST00000508465ENST00000512151ENST00000514307ENST00000514901ENST00000514987ENST00000515460ENSG00000138760ENST00000264896ENST00000452464CIL_00071G_0002ENSMUSG00000029426ENSMUST00000031377ENSMUSG00000034826ENSMUST00000038514ENSMUST00000122893ENSMUST00000123694ENSMUST00000142525
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138750 ENST00000264883 1.754±0.00 N/A N/A N/A 1.998±0.00 5.164±1.20 1.773±0.47 6.635±0.00 3.237±0.95 2.060±0.69 0.978±0.00 8.713±3.49 7.233±1.00 2.780±0.27
ENST00000502850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.333±0.00 N/A N/A N/A
ENST00000504173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507257 N/A N/A 0.621±0.00 1.436±0.56 1.939±0.00 1.699±0.00 N/A 2.855±0.00 1.160±0.00 N/A 1.523±0.00 N/A N/A N/A
ENST00000508465 5.335±0.00 8.937±0.00 N/A N/A 5.657±0.00 5.122±0.00 1.929±0.00 N/A 2.171±0.00 2.247±0.00 N/A N/A N/A N/A
ENST00000508583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512151 N/A N/A N/A N/A 3.022±0.00 N/A 1.258±0.23 N/A N/A N/A N/A 3.725±1.22 5.428±0.00 6.278±0.00
ENST00000513248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.773±0.00 8.172±0.00 11.013±0.00 N/A
ENST00000514313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.559±0.00 N/A 20.238±0.00
ENST00000514987 3.250±0.00 5.187±0.00 N/A 3.685±0.00 2.114±0.46 N/A N/A N/A N/A 1.505±0.00 1.444±0.00 N/A N/A 3.688±0.00
ENST00000515460 N/A N/A 3.377±0.00 6.007±0.00 6.900±0.00 8.720±0.00 3.667±0.00 N/A 10.079±0.00 16.697±0.00 2.144±0.00 7.428±0.00 N/A N/A
ENSG00000138760 ENST00000264896 36.775±0.00 21.098±0.00 14.942±0.00 43.827±5.59 39.206±7.46 34.420±7.75 12.844±5.20 28.397±4.98 31.994±4.83 39.667±5.18 26.805±15.25 31.006±8.30 40.457±3.69 22.355±10.13
ENST00000452464 N/A N/A N/A N/A N/A N/A 11.755±0.00 N/A N/A N/A 38.206±0.00 12.263±0.00 19.110±0.00 N/A
ENST00000502908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029426 ENSMUST00000031377 15.490±5.78 34.173±3.23 32.333±12.81 10.394±2.59 25.130±12.38 27.460±0.96 15.318±3.59 5.018±0.74 10.389±6.17 35.318±11.80 7.431±0.99 32.579±9.97 20.329±5.85 2.648±0.91
ENSMUSG00000034826 ENSMUST00000038514 4.691±0.98 4.254±1.03 4.032±0.45 7.748±1.82 3.741±1.47 3.764±0.69 2.819±0.94 4.903±0.65 8.400±4.08 4.246±1.13 1.800±0.74 4.613±1.29 10.222±2.59 4.440±0.39
ENSMUST00000122893 4.914±1.08 N/A N/A N/A 1.928±0.06 1.649±0.00 2.375±0.00 3.254±0.00 N/A N/A N/A 6.779±2.12 N/A N/A
ENSMUST00000123694 N/A N/A N/A 20.863±0.00 N/A N/A N/A N/A N/A N/A N/A 60.519±0.00 87.691±52.58 15.150±0.00
ENSMUST00000130156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142525 6.555±4.15 1.461±0.00 N/A 8.672±0.00 3.301±0.31 1.431±0.00 N/A 2.482±0.30 N/A N/A N/A 3.172±0.71 N/A 7.068±3.50
ENSMUST00000146470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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