C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00071J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138760-ENSG00000189157 CGP 9606 4:76158737-76283780
GeneTranscriptPositionBiotype
ENSG00000138760 (SCARB2)
scavenger receptor class B, member 2 		ENST00000264896 (SCARB2-001) 76158737-76213893 protein_coding
ENST00000452464 (SCARB2-002) 76161286-76213603 protein_coding
ENST00000502908 (SCARB2-004) 76180735-76195845 retained_intron
ENST00000509994 (SCARB2-003) 76181014-76213600 nonsense_mediated_decay
ENST00000511129 (SCARB2-005) 76163209-76166864 retained_intron
ENSG00000189157 (FAM47E)
family with sequence similarity 47, member E 		ENST00000424749 (FAM47E-001) 76251741-76283754 protein_coding
ENST00000502320 (FAM47E-002) 76251733-76283779 retained_intron
ENST00000510197 (FAM47E-007) 76214040-76283780 protein_coding
ENST00000510328 (FAM47E-006) 76251700-76278655 retained_intron
ENST00000511946 (FAM47E-011) 76278119-76283774 processed_transcript
ENST00000512895 (FAM47E-009) 76214104-76268769 protein_coding
ENST00000515589 (FAM47E-003) 76236269-76256460 processed_transcript
ENST00000606246 (FAM47E-013) 76256453-76268911 protein_coding
ENST00000606550 (FAM47E-012) 76267506-76269614 retained_intron
ENSG00000272414 (FAM47E-STBD1)
FAM47E-STBD1 readthrough 		ENST00000509377 (FAM47E-STBD1-003) 76251733-76310044 nonsense_mediated_decay
ENST00000514140 (FAM47E-STBD1-001) 76263812-76311129 protein_coding
ENST00000514365 (FAM47E-STBD1-002) 76251732-76310379 nonsense_mediated_decay
ENST00000515604 (FAM47E-STBD1-004) 76251721-76311120 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00071J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029426-ENSMUSG00000057068 CGP 10090 5:92443873-92591279
GeneTranscriptPositionBiotype
ENSMUSG00000029426 (Scarb2)
scavenger receptor class B, member 2 		ENSMUST00000031377 (Scarb2-201) 92443873-92505608 protein_coding
ENSMUSG00000057068 (Fam47e)
family with sequence similarity 47, member E 		ENSMUST00000082382 (Fam47e-005) 92571556-92590731 protein_coding
ENSMUST00000131166 (Fam47e-001) 92571537-92591279 protein_coding
ENSMUST00000146417 (Fam47e-002) 92555069-92590760 protein_coding
ENSMUST00000149617 (Fam47e-003) 92555102-92590660 nonsense_mediated_decay
ENSMUST00000175974 (Fam47e-004) 92571536-92591278 protein_coding
ENSMUST00000176448 (Fam47e-006) 92571543-92585384 protein_coding
ENSMUST00000176621 (Fam47e-007) 92571477-92590882 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071J_0001ENSG00000138760ENST00000264896ENST00000452464ENST00000502908ENST00000509994ENST00000511129ENSG00000189157ENST00000424749ENST00000502320ENST00000510197ENST00000510328ENST00000511946ENST00000512895ENST00000515589ENST00000606246ENST00000606550ENSG00000272414ENST00000509377ENST00000514140ENST00000514365ENST00000515604CIL_00071J_0002ENSMUSG00000029426ENSMUST00000031377ENSMUSG00000057068ENSMUST00000082382ENSMUST00000131166ENSMUST00000146417ENSMUST00000149617ENSMUST00000175974ENSMUST00000176448ENSMUST00000176621
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071J_0001ENSG00000138760ENST00000264896ENST00000452464ENSG00000189157ENST00000424749ENST00000502320ENSG00000272414ENST00000509377ENST00000514140ENST00000514365ENST00000515604CIL_00071J_0002ENSMUSG00000029426ENSMUST00000031377ENSMUSG00000057068ENSMUST00000082382ENSMUST00000131166ENSMUST00000146417ENSMUST00000175974ENSMUST00000176448ENSMUST00000176621
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138760 ENST00000264896 36.775±0.00 21.098±0.00 14.942±0.00 43.827±5.59 39.206±7.46 34.420±7.75 12.844±5.20 28.397±4.98 31.994±4.83 39.667±5.18 26.805±15.25 31.006±8.30 40.457±3.69 22.355±10.13
ENST00000452464 N/A N/A N/A N/A N/A N/A 11.755±0.00 N/A N/A N/A 38.206±0.00 12.263±0.00 19.110±0.00 N/A
ENST00000502908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189157 ENST00000424749 N/A N/A 0.980±0.00 1.019±0.00 N/A N/A N/A 2.599±0.00 N/A N/A N/A N/A N/A N/A
ENST00000502320 N/A N/A N/A 1.392±0.00 N/A N/A 0.139±0.00 0.476±0.00 N/A N/A N/A N/A N/A 0.903±0.00
ENST00000510197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272414 ENST00000509377 N/A N/A 0.505±0.00 N/A N/A N/A N/A N/A N/A 0.882±0.00 N/A N/A N/A N/A
ENST00000514140 N/A 2.345±0.00 N/A N/A N/A 2.225±0.00 0.997±0.00 1.507±0.00 N/A N/A N/A 3.788±1.14 3.051±1.55 3.103±0.00
ENST00000514365 N/A 1.706±0.00 N/A N/A N/A N/A N/A N/A 2.333±0.00 N/A N/A 4.475±0.00 6.419±0.00 3.305±0.00
ENST00000515604 N/A N/A N/A 3.165±0.00 N/A N/A N/A N/A N/A 4.751±0.00 N/A 0.755±0.00 N/A 2.772±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029426 ENSMUST00000031377 15.490±5.78 34.173±3.23 32.333±12.81 10.394±2.59 25.130±12.38 27.460±0.96 15.318±3.59 5.018±0.74 10.389±6.17 35.318±11.80 7.431±0.99 32.579±9.97 20.329±5.85 2.648±0.91
ENSMUSG00000057068 ENSMUST00000082382 N/A 0.116±0.00 N/A N/A N/A 0.114±0.00 N/A 0.112±0.00 0.252±0.00 N/A N/A N/A N/A N/A
ENSMUST00000131166 N/A N/A N/A N/A N/A N/A N/A N/A 1.747±1.12 N/A N/A 1.228±0.45 0.169±0.10 N/A
ENSMUST00000146417 N/A N/A 0.074±0.00 0.037±0.00 0.037±0.00 0.038±0.00 0.135±0.15 0.026±0.00 N/A 1.749±0.81 N/A 2.521±1.51 N/A 0.047±0.02
ENSMUST00000149617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175974 N/A N/A 0.072±0.00 N/A N/A N/A N/A 0.094±0.03 1.478±0.33 1.826±0.00 N/A 3.240±1.72 N/A 0.047±0.00
ENSMUST00000176448 0.081±0.00 N/A N/A N/A N/A N/A N/A 0.223±0.09 2.718±1.08 N/A N/A N/A 0.221±0.15 N/A
ENSMUST00000176621 N/A N/A N/A N/A N/A N/A N/A 0.247±0.05 0.237±0.00 N/A N/A N/A N/A N/A

Loading