C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SR-related CTD-associated factor 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139218 SCAF11 9606 - 12:45919131-45992120 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266589 SCAF11-002 45948530-45990565 protein_coding
  ENST00000369367 SCAF11-001 45919131-45990565 protein_coding
  ENST00000395453 SCAF11-005 45960455-45990580 protein_coding
  ENST00000395454 SCAF11-003 45954734-45990584 protein_coding
  ENST00000465950 SCAF11-004 45921409-45929965 protein_coding
  ENST00000474828 SCAF11-006 45961407-45990576 retained_intron
  ENST00000484275 SCAF11-007 45928784-45935083 processed_transcript
  ENST00000546534 SCAF11-015 45930950-45933172 retained_intron
  ENST00000547018 SCAF11-008 45926716-45992120 non_stop_decay
  ENST00000547654 SCAF11-011 45919131-45923100 processed_transcript
  ENST00000547950 SCAF11-013 45924947-45926710 retained_intron
  ENST00000549162 SCAF11-009 45922048-45934510 protein_coding
  ENST00000550629 SCAF11-010 45919131-45924788 processed_transcript
  ENST00000550893 SCAF11-012 45922356-45924788 protein_coding
  ENST00000551391 SCAF11-014 45945084-45948530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369367ENST00000395453ENST00000465950ENST00000547018ENST00000549162
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369367 8.738±0.00 4.502±0.00 2.118±0.00 2.352±0.08 3.210±0.36 4.760±0.05 4.173±1.83 5.151±0.99 3.283±1.03 6.932±1.00 1.794±0.60 4.899±1.35 3.741±1.43 3.619±0.24
ENST00000395453 N/A N/A N/A 4.312±0.00 N/A N/A N/A N/A N/A N/A N/A 9.733±0.00 N/A 12.085±0.00
ENST00000465950 N/A N/A N/A N/A N/A N/A 1.435±0.00 N/A N/A N/A N/A N/A 2.191±0.00 3.626±0.00
ENST00000547018 N/A N/A 3.179±0.00 N/A 4.832±0.00 4.533±0.00 2.315±0.00 N/A 5.020±0.00 6.337±0.00 1.563±0.00 N/A N/A N/A
ENST00000549162 N/A N/A 6.779±0.00 2.340±0.00 5.676±1.70 5.055±0.00 2.526±0.15 N/A 4.877±0.00 7.854±0.00 2.901±0.90 4.446±2.49 3.221±0.00 8.182±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0001 CGP 12:45729665-45992120
CIL_0005YN CIL_0005YN_0001 CGP 12:45919131-46270017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000375 IDA RNA splicing, via transesterification reactions
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006397 TAS mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IDA RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045885 scaf11 SR-related CTD-associated factor 11 protein_coding Danio_rerio
ENSMUSG00000033228 Scaf11 SR-related CTD-associated factor 11 protein_coding Mus_musculus

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