C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369367 SCAF11-001 ENSG00000139218 9606 - 12:45919131-45990565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369367 8.738±0.00 4.502±0.00 2.118±0.00 2.352±0.08 3.210±0.36 4.760±0.05 4.173±1.83 5.151±0.99 3.283±1.03 6.932±1.00 1.794±0.60 4.899±1.35 3.741±1.43 3.619±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0001 CGP 12:45729665-45992120
CIL_0005YN CIL_0005YN_0001 CGP 12:45919131-46270017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000375 IDA RNA splicing, via transesterification reactions
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006397 TAS mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IDA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047835 Scaf11-201 protein_coding Mus_musculus 0 1482
ENSMUST00000118038 Gm7108-001 processed_pseudogene Mus_musculus 0 785
ENSMUST00000132491 Brap-003 retained_intron Mus_musculus 0.0001 55

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