C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139220 PPFIA2 9606 - 12:81257975-81759553 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333447 PPFIA2-201 81257975-81598371 protein_coding
  ENST00000407050 PPFIA2-006 81259601-81598371 protein_coding
  ENST00000443686 PPFIA2-008 81261967-81598340 protein_coding
  ENST00000541017 PPFIA2-202 81257975-81369414 protein_coding
  ENST00000541570 PPFIA2-010 81259166-81369414 protein_coding
  ENST00000545296 PPFIA2-007 81259101-81598256 processed_transcript
  ENST00000547180 PPFIA2-024 81294582-81299331 retained_intron
  ENST00000547273 PPFIA2-025 81675486-81687560 processed_transcript
  ENST00000547623 PPFIA2-014 81457806-81759313 protein_coding
  ENST00000548453 PPFIA2-015 81424849-81512384 processed_transcript
  ENST00000548586 PPFIA2-004 81261961-81758653 protein_coding
  ENST00000548670 PPFIA2-019 81358183-81369405 protein_coding
  ENST00000548790 PPFIA2-017 81369125-81445578 protein_coding
  ENST00000549325 PPFIA2-003 81258877-81758670 protein_coding
  ENST00000549344 PPFIA2-021 81339188-81344768 retained_intron
  ENST00000549396 PPFIA2-001 81258266-81759330 protein_coding
  ENST00000549917 PPFIA2-020 81339210-81350486 processed_transcript
  ENST00000550018 PPFIA2-023 81277372-81325810 protein_coding
  ENST00000550359 PPFIA2-009 81259436-81512362 protein_coding
  ENST00000550584 PPFIA2-002 81258267-81758693 protein_coding
  ENST00000550798 PPFIA2-013 81676657-81759314 retained_intron
  ENST00000551147 PPFIA2-022 81281338-81339214 protein_coding
  ENST00000551442 PPFIA2-012 81445631-81759553 protein_coding
  ENST00000551461 PPFIA2-011 81259268-81369349 nonsense_mediated_decay
  ENST00000552006 PPFIA2-026 81505680-81512345 processed_transcript
  ENST00000552020 PPFIA2-016 81439880-81676847 retained_intron
  ENST00000552948 PPFIA2-005 81261967-81758647 protein_coding
  ENST00000553058 PPFIA2-018 81347712-81369423 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryTestisENST00000407050ENST00000549396ENST00000550359ENST00000550584ENST00000552948
Transcript ID Brain Liver Ovary Testis
ENST00000407050 7.759±0.00 N/A N/A 3.047±0.00
ENST00000549396 5.923±0.00 N/A N/A N/A
ENST00000550359 N/A N/A 0.139±0.00 5.664±0.00
ENST00000550584 7.459±0.18 0.682±0.00 N/A N/A
ENST00000552948 N/A N/A N/A 4.349±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BF CIL_0002BF_0002 CGP 12:80792520-81261205
CIL_000218 CIL_000218_0002 CGP 12:80936414-81759553

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0032403 IEA protein complex binding
GO:0045202 IEA synapse
GO:0048786 IEA:TAS presynaptic active zone
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013000 ppfia2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 protein_coding Danio_rerio
ENSMUSG00000053825 Ppfia2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 protein_coding Mus_musculus

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