C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000266735 SNRPF-001 ENSG00000139343 9606 + 12:95858928-95867053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266735
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266735 6.630±0.00 9.218±0.00 0.873±0.00 4.503±0.01 3.037±1.09 3.768±0.59 2.316±1.14 4.224±0.56 5.336±1.36 3.199±1.50 1.388±0.35 34.259±41.17 26.142±19.61 23.657±14.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Y3 CIL_0000Y3_0002 CGP 12:95657807-95903828

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IMP RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006396 IEA RNA processing
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 IMP RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 IDA small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020203 Snrpf-001 protein_coding Mus_musculus 0 409
ENSMUST00000136346 Gm13092-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000092215 Ccdc38-001 protein_coding Mus_musculus 2e-30 137

Loading